Closed deprekate closed 3 years ago
The misc_features added to the input genbank file that represent the PhiSpy prophage calls is off by 1
$ grep pp3 prophage_coordinates.tsv pp3 NC_002737 1191309 1222549 1193572 1193583 1220349 1220360 TCAGATTTTTT AAAAAATCTGA Longest Repeat flanking phage and within 2000 bp $ head -n 25734 Streptococcus_pyogenes_M1_GAS.gb | tail -n 2 misc_feature 1191310..1222549 /note="prophage region pp3 identified with PhiSpy v4.2.6"
It should be:
misc_feature 1191309..1222549
The misc_features added to the input genbank file that represent the PhiSpy prophage calls is off by 1
It should be: