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linsalrob / PhiSpy

Prediction of prophages from bacterial genomes
MIT License
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Parameter to indicate file name prefixes+ #58

Closed ireneortega closed 1 year ago

ireneortega commented 2 years ago

What is the parameter required to indicate file name prefixes?

I am interested in this part of the information:

file name prefixes By default the outputs from PhiSpy.py have standard names. If you supply a file name prefix it will be prepended to all the file so that you can run PhiSpy.py on multiple genomes and have the outputs in the same directory without overwriting each other.

I can't find anything related when typing -h

linsalrob commented 1 year ago

The correct parameter is 

  -p FILE_PREFIX, --file_prefix FILE_PREFIX
                        An optional prefix to prepend to all of the output
                        files