I'm encountering a problem when running phispy (conda environment) with the provided test files.
The analysis runs with no problems and I can see that it identifies prophages but then the output files are not created and I get the following error:
File "/Users/oihira/anaconda3/envs/prophaging/lib/python3.10/site-packages/PhiSpyModules/writers.py", line 325, in write_all_outputs
self.record.get_entry(self.pp[i]['contig']).append_feature(SeqFeature(
TypeError: SeqFeature.__init__() got an unexpected keyword argument 'strand'.
Hi!
I'm encountering a problem when running phispy (conda environment) with the provided test files. The analysis runs with no problems and I can see that it identifies prophages but then the output files are not created and I get the following error:
TypeError: SeqFeature.__init__() got an unexpected keyword argument 'strand'.
Any idea why?
Thanks a lot! /Oihane