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linsalrob / fastq-pair

Match up paired end fastq files quickly and efficiently.
https://edwards.flinders.edu.au/sorting-and-paring-fastq-files/
MIT License
142 stars 32 forks source link

Discarding unmatched reads #13

Open rezenman opened 4 years ago

rezenman commented 4 years ago

Hey! Is there any way to keep only matched reads from both files while discarding all reads that does not match? In order to save some storage space Thanks