Closed asierFernandezP closed 9 months ago
Hi,
You mention that COBRA has so far only been tested on assembled contigs from metaSPAdes, IDBA_UD, and MEGAHIT. Would you recommend to use it on viral contigs that have been assembled using single cell mode (--sc) from SPAdes (used in our study for metaviromes)?
Thank you, Asier
Hi Asier,
I believe it is ok to use COBRA for your data, please select "metaspades" for the assembler option.
Let me know if you have other questions.
Best, LINXING
Hi,
You mention that COBRA has so far only been tested on assembled contigs from metaSPAdes, IDBA_UD, and MEGAHIT. Would you recommend to use it on viral contigs that have been assembled using single cell mode (--sc) from SPAdes (used in our study for metaviromes)?
Thank you, Asier