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linzhi2013 / MitoZ

MitoZ: A toolkit for assembly, annotation, and visualization of animal mitochondrial genomes
https://doi.org/10.1093/nar/gkz173
GNU General Public License v3.0
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fastq format #219

Open oliverP222 opened 2 months ago

oliverP222 commented 2 months ago

using MitoZ in Docker, works well with my fastq.gz files but when I download from SRA, these reads fail. Looking at the output, the cleaned sequence file is empty. I assume there is some format issue between archived .fastq.gz files and what you get directly from Illumina sequencers. Any help would be greatly appreciated.

linzhi2013 commented 2 months ago

You can compare the formats of your fastq.gz files and the archived fastq.gz files, and ask ChatGPT to write a script for the format conversion.

Best