Centrifuge does not find the correct perl installation in the HPC. Therefore Plascope does not produce plasmid predictions. See error below:
Cwd.c: loadable library and perl binaries are mismatched (got handshake key 0xde00080, needed 0xdb00080)
Temporary fix:
Modify the PERL5LIB path in .bashrc file. Add following line:
export PERL5LIB=/hpc/dla_mm/jpaganini/data/miniconda3/envs/plascope_ec_lv/lib/perl5/5.22.0/
This directs centrifuge to the correct perl libraries in the plascope_ec_ev (the one created for running the plascope within the EC)
(Each user will have to modify their own path to the miniconda or conda installation)
Centrifuge does not find the correct perl installation in the HPC. Therefore Plascope does not produce plasmid predictions. See error below:
Cwd.c: loadable library and perl binaries are mismatched (got handshake key 0xde00080, needed 0xdb00080)Temporary fix: Modify the PERL5LIB path in .bashrc file. Add following line:
export PERL5LIB=/hpc/dla_mm/jpaganini/data/miniconda3/envs/plascope_ec_lv/lib/perl5/5.22.0/This directs centrifuge to the correct perl libraries in the plascope_ec_ev (the one created for running the plascope within the EC) (Each user will have to modify their own path to the miniconda or conda installation)