search

lisavader / plasmidEC

An ensemble of plasmid classification tools
MIT License
3 stars 2 forks source link

centrifuge build version #12

Closed JesseKerkvliet closed 2 years ago

JesseKerkvliet commented 2 years ago

Hi, Julian and I spent the better part of today trying to figure out why his plascope did something different compared to mine. The outcome: I had an older build version of centrifuge.

Proposed solution: hardcode the build version of centrifuge in the command installing plascope/centrifuge in the plasmidEC_plascope environment, or (in the case this is handled by plascope) update it after installing plascope.

Code that solved my issue: conda install centrifuge=1.0.3=py36pl5.22.0_3 -c bioconda

lisavader commented 2 years ago

Hi Jesse, I thought that the plascope conda environment would include a specific version of centrifuge, but this is apparently not the case. I will implement your solution.

lisavader commented 2 years ago

Closed by 8913a0d9c8cd9b013d42452ca141e9cc3067d350