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lisc-tools / lisc

Literature Scanner: Automated collection & analyses of the scientific literature.
https://lisc-tools.github.io/
Apache License 2.0
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Multiple terms collect question #76

Closed skytguuu closed 2 years ago

skytguuu commented 2 years ago

Hi,

Thanks for your developed tool "lisc". However, I am curious about the collection words with multiple terms. I have two lists of terms (terms_A and terms_B) and I want to use 'collect_words' to query the title and abstract of pubmed. However, I don't know how to use the co-occurance of these terms?

BTW, I noticed the parameter of 'collect_words' had inclusion and exclusion:(collect_words(terms, inclusions=None, exclusions=None)), but I don't know how to use the inclusion, could you give me a example?

Thanks!

TomDonoghue commented 2 years ago

Please see the documentation, and in particular the tutorials for guidance on how to use the module. Collecting co-occurence is done with collect_counts, and how to use search terms is covered in the tutorials.

Opening issues is to used for bug reports and clarifications of anything unclear from the documentation - but you should start by engaging with the available materials.

skytguuu commented 2 years ago

Hi,

Thanks for your promptly reply. I have followed the tutorials and indeed, the collect_counts have terms_a and terms_b, but is it still used for collect_words? I am a newer for python and I have tried several times, but it failed. Could you give me a hand?

I am appreciated for your help! Thanks!

TomDonoghue commented 2 years ago

There is only one set of terms for "words" collection, so there is no 'A' and 'B'. The 'A' and 'B' is to collect co-occurences between two sets of terms. When collecting words data, it collects the papers returned by a single set of search terms.

skytguuu commented 2 years ago

Got it. Thanks for your help!

Many thanks!

发自我的iPhone

------------------ Original ------------------ From: Tom @.> Date: Tue,Nov 9,2021 0:07 AM To: lisc-tools/lisc @.> Cc: skytguuu @.>, Author @.> Subject: Re: [lisc-tools/lisc] Multiple terms collect question (Issue #76)

There is only one set of terms for "words" collection, so there is no 'A' and 'B'. The 'A' and 'B' is to collect co-occurences between two sets of terms. When collecting words data, it collects the papers returned by a single set of search terms.

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