Bump optuna from 3.4.0 to 3.5.0

[dependabot[bot]]

Bumps optuna from 3.4.0 to 3.5.0.

Release notes

Sourced from optuna's releases.

v3.5.0

This is the release note of v3.5.0.

Highlights

This is a maintenance release with various bug fixes and improvements to the documentation and more.

Breaking Changes

• Isolate the fast.ai module from optuna (optuna/optuna-integration#49, thanks @​sousu4!)
• Change n_objectives condition to be greater than 4 in candidates functions (#5121, thanks @​adjeiv!)

New Features

• Support constraints in plot contour (#4975, thanks @​y-kamiya!)
• Support infeasible coloring for plot_timeline (#5014)
• Support constant_liar in multi-objective TPESampler (#5021)
• Add optuna study-names cli (#5029)
• Use ExpectedHypervolumeImprovement candidates function for BotorchSampler (#5065, thanks @​adjeiv!)
• Fix logei_candidates_func in botorch.py (#5094, thanks @​sousu4!)
• Report CV scores from within OptunaSearchCV (#5098, thanks @​adjeiv!)

Enhancements

• Support constant_liar in multi-objective TPESampler (#5021)
• Make positional args to kwargs in suggest_int (#5044)
• Ensure n_below is never negative in TPESampler (#5074, thanks @​p1kit!)
• Improve visibility of infeasible trials in plot_contour (#5107)

Bug Fixes

• Fix random number generator of NSGAIIChildGenerationStrategy (#5003)
• Return trials for above in MO split when n_below=0 (#5079)
• Enable loading of read-only files (#5103, thanks @​Guillaume227!)
• Fix logpdf for scaled truncnorm (#5110)
• Fix the bug of matplotlib's plot_rank function (#5133)

Documentation

• Add the table of dependencies in each integration module (#5005)
• Enhance the documentation of LightGBM tuner and separate train() from __init__.py (#5010)
• Update link to reference (#5064)
• Update the FAQ on reproducible optimization results to remove note on HyperbandPruner (#5075, thanks @​felix-cw!)
• Remove MOTPESampler from index.rst file (#5084, thanks @​Ashhar-24!)
• Add a note about the deprecation of MOTPESampler to the doc (#5086)
• Add the TPE tutorial paper to the doc-string (#5096)
• Update README.md to fix the installation and integration (#5126)
• Clarify that Recommended budgets include n_startup_trials (#5137)

Examples

... (truncated)

Commits

• b51db34 Merge pull request #5144 from nabenabe0928/release-v3.5.0
• 702ce73 Bump up version number to 3.5.0
• 6079b79 Revert "Pin the version of PyQt6-Qt6" (#5140)
• 44ad029 [hotfix] Fix the bug of matplotlib's plot_rank function (#5133)
• cebffe9 Clarify Recommended budgets (#5137)
• bc4ee3e Fix logei_candidates_func in botorch.py (#5094)
• f1754e8 Merge pull request #5135 from not522/fix-pyqt6-qt6
• c1d671c Merge pull request #5134 from nabenabe0928/reduce-tests-to-oldest-and-latest
• 12e0c50 Pin the version of PyQt6-Qt6
• 11afa29 Merge pull request #5105 from Alnusjaponica/fix-type-annotation
• Additional commits viewable in compare view

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[codecov[bot]]

Codecov Report

All modified and coverable lines are covered by tests :white_check_mark:

Comparison is base (42be500) 91.71% compared to head (2aec6c1) 91.71%. Report is 3 commits behind head on main.

:exclamation: Current head 2aec6c1 differs from pull request most recent head 178e99b. Consider uploading reports for the commit 178e99b to get more accurate results

Additional details and impacted files

```diff @@ Coverage Diff @@ ## main #1558 +/- ## ======================================= Coverage 91.71% 91.71% ======================================= Files 43 43 Lines 2800 2800 Branches 349 349 ======================================= Hits 2568 2568 Misses 213 213 Partials 19 19 ```

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