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lisphilar / covid19-sir

CovsirPhy: Python library for COVID-19 analysis with phase-dependent SIR-derived ODE models.
https://lisphilar.github.io/covid19-sir/
Apache License 2.0
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[New] Extending support for County level COVID-19 Impact Assessment #851

Closed AnujTiwari closed 3 years ago

AnujTiwari commented 3 years ago

Hi All, Please help me to utilize the CovsirPhy for US County Level COVID-19 Impact Assessment. My aim is to index all 3142 US counties as per the impact of COVID-19.

I can request the local health department for clinical datasets. Please help me to understand the following points:

  1. What are the minimum parameters required to perform the county-level COVID-19 impact assessment using CovsirPhy.
  2. If I can collect county-level vaccination and variant details, is it possible to utilize them with the current model.
  3. What is the best output parameter (like R0) we can use for comparative evaluation of COIVD-19 impact and indexing counties.

I am very much new to the domain of compartmental modeling so, please help me to understand if I am leaving some important details required to extend the model for the county level.

Thanks

lisphilar commented 3 years ago

Thank you for the notice, but it is difficult to track all problems here. Could you create separate issues for Babour and Wilcox problems?

Here we will discuss adding new methods to DataLoader and documentation of them. I will release a new stable version after closing this issue.

AnujTiwari commented 3 years ago

Sure, I will create seperate issues for these problems. Thanks

lisphilar commented 3 years ago

Dear @AnujTiwari , Could you review the updated documentation of the new DataLoader with following links? Version 2.22.0 is planned in Jul2021. https://lisphilar.github.io/covid19-sir/markdown/LOADING.html

AnujTiwari commented 3 years ago

Sure I am working on it... Thanks

lisphilar commented 3 years ago

Thank you.

FYI. Some tables are broken there and they may be fixed with a new commit in about twenty minutes (time for deployment). https://github.com/lisphilar/covid19-sir/commit/23b931778c6a210b20f117b84d38bd5780ecb062