Open QianhuiWan opened 3 years ago
Hi Qianhui, Thank you for taking an interest in our package. I believe it may be possible, but with some considerations:
I hope to hear back from you soon :) Cheers, Gabriel
Hi Gabriel,
Thank you so much for your prompt reply and suggestions. We have EPIC array data from 131 samples, I think I will run by chromosome.
Best regards Qianhui
Try for one of the smaller chromosomes first, and record how long it takes to complete. Please let us know how it goes
Hi Gabriel,
I have used 6 cores and 16GB memory for the gene-related probes (EPIC array) on chr22, I cannot get the result from the GetResiduals()
function because the 16GB memory is not enough, I probably need to use HPC to process these data, thank you.
Best regards Qianhui
Hello, I have tested the CoMethAllRegions() function with a small subset of the EPIC data we have, and I assume this function will need a larger ram for processing all EPIC array data. Is it possible to process EPIC array data (gene-related probes) using a machine with 8 cores and 16GB of RAM? Thank you.