search

liud4 / rVMAP

Data Management code for VMAC-MAP study
Other
3 stars 0 forks source link

Update derivation of biospecimen availability for December freeze. #67

Closed liud4 closed 10 months ago

liud4 commented 11 months ago

https://github.com/liud4/rVMAP/blob/1e8aa09d639dcd810d04a8702fa163864245635a/R/process_biospecimen_availability.R#L1

Below is the Asana link for the derivation details.

https://app.asana.com/0/0/949492026778640/1205405098937435/f

liud4 commented 11 months ago

For your reference, here is the code I wrote to create the biospecimen availability data for VMAP data sharing portal.

merged.df.nl$plasma.availability <- merged.df.nl$serum.availability <- merged.df.nl$dna.availability <- merged.df.nl$paxgene.availability <- ifelse(!is.na(merged.df.nl$blood.complete)& (merged.df.nl$blood.complete == "1"), "Yes", "No") merged.df.nl$csf.availability <- ifelse(!is.na(merged.df.nl$csf.fluid) & (merged.df.nl$csf.fluid == "1"), "Yes", "No")

panpanzhang99299 commented 10 months ago

Resolved (process_biospecimen_availability.R).