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liuhong-jia / scAnno

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Issue with "max_iter" after running scAnno() #2

Open CVendrell11 opened 1 year ago

CVendrell11 commented 1 year ago

It seems that there's a problem with the "max_iter" returning a floating value 10000.0 instead of an int value as expected in the LogisticRegression. Does anyone know how to solve this problem? Thanks

results = scAnno(query = obj.seu,

  • ref.expr = ref.expr,
  • ref.anno = ref.anno,
  • save.markers = "markers",
  • cluster.col = "seurat_clusters",
  • factor.size = 0.1,
  • pvalue.cut = 0.01,
  • seed.num = 10,
  • redo.markers = FALSE,
  • gene.anno = gene.anno,
  • permut.num = 100,
  • permut.p = 0.01,
  • show.plot = TRUE,
  • verbose = TRUE,
  • tcga.data.u = tcga.data.u
  • ) [INFO] Checking the legality of parameters [INFO] 30 cell types in reference, 29 clusters in query objects [INFO] Deconvolution by using RLM method [INFO] Logistic regression for cell-type predictions, waiting... Error: sklearn.utils._param_validation.InvalidParameterError: The 'max_iter' parameter of LogisticRegression must be an int in the range [0, inf). Got 100000.0 instead.
mengxiao-he commented 1 year ago

I'm also having the exact same issue. Did you manage to find a solution for this?

LiMo-bioxer commented 1 year ago

Me too！！！

christophechu commented 1 year ago

same question