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liulab-dfci / MAESTRO

Single-cell Transcriptome and Regulome Analysis Pipeline
GNU General Public License v3.0
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chromap — Illegal instruction (core dumped) #153

Open kOoLiNuS opened 2 years ago

kOoLiNuS commented 2 years ago

Ciao ! On a fresh MAESTRO — release 1.5.1 — installation (Ubuntu 18.04 with Python v3.8.12 installed) I tried to run chromap, chromap --version or chromap -h having immediately Illegal instruction (core dumped) as a result.

I did also try to update chromap with conda install -c bioconda chromap obtaining chromap-0.1.5-h9a82719_0 with no error during installation but, again the Illegal instruction error happened.

What can I do? Thanks

kOoLiNuS commented 2 years ago

update = with the MAESTRO env enabled I do have:

$ whereis chromap
chromap: /opt/mambaforge/bin/chromap
/opt/mambaforge/envs/MAESTRO/bin/chromap

The first one (installed with bioconda, given the path) works ok.

hukai916 commented 2 years ago

Hi developers,

I encountered the same chromap (Illegal instruction (core dumped)) issue, something must be wrong with the chromap env. I personally found conda-backed environments harder to replicate than the container based environments, so it would be great if the Docker image can be updated more regularly.

Thanks!

wangjk321 commented 11 months ago

I have the same problem . I think this may fix the problem:

conda remove --force chromap
conda config --remove channels liulab-dfci
conda install -c bioconda -c conda-forge --no-deps chromap==0.1