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liulab-dfci / MAESTRO

Single-cell Transcriptome and Regulome Analysis Pipeline
GNU General Public License v3.0
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Pass in existing Seurat/SingleCellExperiment Object #77

Open bc2zb opened 3 years ago

bc2zb commented 3 years ago

Is it possible to pass in an existing Seurat object (or converted SingleCellExperiment object)? I have a pretty robust pipeline that does QC, clustering and such, would like to have some level of preservation of those clusters and such.

crazyhottommy commented 3 years ago

Thanks, we should make the pipeline more flexible. Will put it on our todo list.

crazyhottommy commented 3 years ago

@baigal628 I rethink about it. Let's create a tutorial using the MAESTRO R functions to process the Seurat object. Not necessary put this into snakemake workflow.