Documentation clarification

liulab-dfci / MAESTRO

Single-cell Transcriptome and Regulome Analysis Pipeline

GNU General Public License v3.0

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Documentation clarification #78

Closed bc2zb closed 3 years ago

bc2zb commented 3 years ago

It would be appreciated if the documentation explicitly mentioned that rownames of the input matrixes need to be gene symbols and not other annotations. Took me a while to figure out that LISA requires symbols, and that the mismatch in rownames of my ATAC and RNA data kept causing Incorporate() to segfault. However, I also admit I am using a slightly processed counts matrix for my RNA input, which used ensemble ids as the rownames.

crazyhottommy commented 3 years ago

@baigal628 can you please fix this? Thanks!

crazyhottommy commented 3 years ago

addressed by https://github.com/liulab-dfci/MAESTRO/pull/79