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liulab-dfci / RIMA_pipeline

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Problems installing RIMA environment #23

Open lisch7 opened 7 months ago

lisch7 commented 7 months ago

Hi，

I tried to install RIMA environment. However, I found out that I could not install two python module (mhcnuggets==2.3.3, mhctools==1.8.1). Other necessary module and packages were installed successfully and their versions were matched with rnaseq.yml . When I installed mhctools==1.8.1, an error occured as followings:

ERROR: Could not find a version that satisfies the requirement pylint<3.0.0,>=2.17.2 (from pyensembl>=1.0.3->mhctools==1.8.1) (from versions: 0.15.2, 0.16.0, 0.18.0, 0.18.1, 0.19.0, 0.20.0, 0.21.0, 0.21.1, 0.21.2, 0.21.3, 0.22.0, 0.23.0, 0.24.0, 0.25.0, 0.25.1, 0.25.2, 0.26.0, 0.27.0, 0.28.0, 1.0.0, 1.1.0, 1.2.0, 1.2.1, 1.3.0, 1.3.1, 1.4.0, 1.4.1, 1.4.2, 1.4.3, 1.4.4, 1.4.5, 1.5.0, 1.5.1, 1.5.2, 1.5.3, 1.5.4, 1.5.5, 1.5.6, 1.6.0, 1.6.1, 1.6.2, 1.6.3, 1.6.4, 1.6.5, 1.7.0, 1.7.1, 1.7.2, 1.7.3, 1.7.4, 1.7.5, 1.7.6, 1.8.0, 1.8.1, 1.8.2, 1.8.3, 1.8.4, 1.9.0, 1.9.1, 1.9.2, 1.9.3, 1.9.4, 1.9.5, 2.0.0.dev0, 2.0.0.dev1, 2.0.0.dev2, 2.0.0, 2.0.1, 2.1.0, 2.1.1, 2.2.0, 2.2.1, 2.2.2, 2.2.3, 2.3.0.dev0, 2.3.0.dev1, 2.3.0.dev2, 2.3.0, 2.3.1, 2.4.0, 2.4.1, 2.4.2, 2.4.3, 2.4.4, 2.5.0, 2.5.1, 2.5.2, 2.5.3, 2.6.0, 2.6.1, 2.6.2, 2.7.0.dev1, 2.7.0, 2.7.1.dev1, 2.7.1, 2.7.2, 2.7.3, 2.7.4, 2.8.0, 2.8.1.dev1, 2.8.1, 2.8.2, 2.8.3, 2.9.0.dev1, 2.9.0, 2.9.1, 2.9.2, 2.9.3, 2.9.4, 2.9.5, 2.9.6, 2.10.0, 2.10.1, 2.10.2, 2.11.0, 2.11.1, 2.12.0, 2.12.1, 2.12.2, 2.13.0, 2.13.1, 2.13.2, 2.13.3, 2.13.4, 2.13.5, 2.13.6, 2.13.7, 2.13.8, 2.13.9, 3.0.0a0, 3.0.0a1, 3.0.0a3, 3.0.0a4)
ERROR: No matching distribution found for pylint<3.0.0,>=2.17.2 (from pyensembl>=1.0.3->mhctools==1.8.1)

When I installed mhcnuggets==2.3.3, an error occured as followings:

ERROR: Package 'joblib' requires a different Python: 3.6.10 not in '>=3.7'

I would be appreciated if you can assit with this issue.

lisch7 commented 7 months ago

Now the infomation of RIMA enviroment was as follows:

$ conda list
# packages in environment at /home/mailab003/biosoft/miniconda3/envs/RIMA:
#
# Name                    Version                   Build  Channel
_libgcc_mutex             0.1                 conda_forge    conda-forge
_openmp_mutex             4.5                       2_gnu    conda-forge
_r-mutex                  1.0.1               anacondar_1    conda-forge
_tflow_select             2.3.0                       mkl    https://mirrors.bfsu.edu.cn/anaconda/pkgs/main
absl-py                   2.0.0              pyhd8ed1ab_0    https://mirrors.bfsu.edu.cn./anaconda/cloud/conda-forge
aioeasywebdav             2.4.0           py36h5fab9bb_1001    conda-forge
aiohttp                   3.7.4.post0      py36h8f6f2f9_0    conda-forge
appdirs                   1.4.4              pyh9f0ad1d_0    conda-forge
astor                     0.8.1              pyh9f0ad1d_0    https://mirrors.bfsu.edu.cn./anaconda/cloud/conda-forge
astunparse                1.6.3              pyhd8ed1ab_0    https://mirrors.bfsu.edu.cn./anaconda/cloud/conda-forge
async-timeout             3.0.1                   py_1000    conda-forge
atk-1.0                   2.38.0               hd4edc92_1    conda-forge
attrs                     22.2.0             pyh71513ae_0    conda-forge
backports                 1.0                pyhd8ed1ab_3    conda-forge
backports.functools_lru_cache 2.0.0              pyhd8ed1ab_0    conda-forge
bbmap                     39.01                h92535d8_1    bioconda
bcrypt                    3.2.0            py36h8f6f2f9_1    conda-forge
bedtools                  2.29.1               hc088bd4_1    bioconda
binutils_impl_linux-64    2.33.1               he1b5a44_7    conda-forge
binutils_linux-64         2.33.1              h9595d00_17    conda-forge
biopython                 1.76             py36h516909a_0    https://mirrors.bfsu.edu.cn./anaconda/cloud/conda-forge
blas                      1.0                         mkl    conda-forge
blast                     2.15.0          pl5321h6f7f691_1    bioconda
blinker                   1.5                pyhd8ed1ab_0    https://mirrors.bfsu.edu.cn./anaconda/cloud/conda-forge
boto3                     1.21.32            pyhd8ed1ab_0    conda-forge
botocore                  1.24.32            pyhd3eb1b0_0    anaconda
bowtie                    1.3.1            py36h769816f_3    bioconda
brotlipy                  0.7.0           py36h8f6f2f9_1001    conda-forge
bwidget                   1.9.14               ha770c72_1    conda-forge
bzip2                     1.0.8                hd590300_5    conda-forge
c-ares                    1.26.0               hd590300_0    conda-forge
ca-certificates           2023.11.17           hbcca054_0    conda-forge
cachetools                5.0.0              pyhd8ed1ab_0    conda-forge
cairo                     1.16.0            h18b612c_1001    conda-forge
certifi                   2021.5.30        py36h5fab9bb_0    conda-forge
cffi                      1.14.6           py36hd8eec40_1    conda-forge
chardet                   4.0.0            py36h5fab9bb_1    conda-forge
charset-normalizer        2.1.1              pyhd8ed1ab_0    conda-forge
click                     8.0.1            py36h5fab9bb_0    conda-forge
coloredlogs               15.0.1           py36h5fab9bb_1    conda-forge
colormath                 3.0.0                      py_2    conda-forge
configargparse            1.7                pyhd8ed1ab_0    conda-forge
cryptography              35.0.0           py36hb60f036_0    conda-forge
curl                      7.87.0               h6312ad2_0    conda-forge
cycler                    0.11.0             pyhd8ed1ab_0    conda-forge
dataclasses               0.8                pyh787bdff_2    https://mirrors.bfsu.edu.cn./anaconda/cloud/conda-forge
datrie                    0.8.2            py36h8f6f2f9_2    conda-forge
decorator                 4.4.2                      py_0    conda-forge
defusedxml                0.7.1              pyhd8ed1ab_0    conda-forge
docutils                  0.17.1           py36h5fab9bb_0    conda-forge
dropbox                   11.36.2            pyhd8ed1ab_0    conda-forge
entrez-direct             16.2                 he881be0_1    bioconda
expat                     2.5.0                hcb278e6_1    conda-forge
fftw                      3.3.9                h27cfd23_1    anaconda
filechunkio               1.6                      py36_0    bioconda
font-ttf-dejavu-sans-mono 2.37                 hab24e00_0    conda-forge
font-ttf-inconsolata      3.000                h77eed37_0    conda-forge
font-ttf-source-code-pro  2.038                h77eed37_0    conda-forge
font-ttf-ubuntu           0.83                 h77eed37_1    conda-forge
fontconfig                2.14.2               h14ed4e7_0    conda-forge
fonts-conda-ecosystem     1                             0    conda-forge
fonts-conda-forge         1                             0    conda-forge
freetype                  2.12.1               h267a509_2    conda-forge
fribidi                   1.0.10               h36c2ea0_0    conda-forge
ftputil                   3.2                      py36_0    bioconda
future                    0.18.2           py36h5fab9bb_3    conda-forge
gast                      0.3.3                      py_0    https://mirrors.bfsu.edu.cn./anaconda/cloud/conda-forge
gatk4                     4.1.4.1                       0    bioconda
gcc_impl_linux-64         7.3.0                habb00fd_1    defaults
gcc_linux-64              7.3.0               h553295d_17    conda-forge
gdk-pixbuf                2.42.8               hff1cb4f_1    conda-forge
gettext                   0.21.1               h27087fc_0    conda-forge
gfortran_impl_linux-64    7.3.0                hdf63c60_1    anaconda
gfortran_linux-64         7.3.0               h553295d_17    conda-forge
ghostscript               9.18                          1    bioconda
giflib                    5.2.1                h0b41bf4_3    conda-forge
gitdb                     4.0.10             pyhd8ed1ab_0    conda-forge
gitpython                 3.1.18             pyhd8ed1ab_0    conda-forge
glib                      2.78.3               hfc55251_0    conda-forge
glib-tools                2.78.3               hfc55251_0    conda-forge
gmap                      2023.10.10           h9d449c0_1    bioconda
google-api-core           2.8.0              pyhd8ed1ab_1    conda-forge
google-auth               2.23.0             pyh1a96a4e_0    conda-forge
google-auth-oauthlib      0.4.6              pyhd8ed1ab_0    https://mirrors.bfsu.edu.cn./anaconda/cloud/conda-forge
google-cloud-core         2.3.1              pyhd8ed1ab_0    conda-forge
google-cloud-storage      2.10.0             pyh1a96a4e_0    conda-forge
google-crc32c             1.1.2            py36h0208b43_0    conda-forge
google-pasta              0.2.0              pyh8c360ce_0    https://mirrors.bfsu.edu.cn./anaconda/cloud/conda-forge
google-resumable-media    2.3.3              pyhd8ed1ab_0    conda-forge
googleapis-common-protos  1.53.0           py36h5fab9bb_0    conda-forge
graphite2                 1.3.14               h295c915_1    anaconda
graphviz                  2.50.0               h8e749b2_2    conda-forge
grpcio                    1.38.1           py36h8e87921_0    conda-forge
gtk2                      2.24.33              h90689f9_2    conda-forge
gts                       0.7.6                h977cf35_4    conda-forge
gxx_impl_linux-64         7.3.0                hdf63c60_1    anaconda
gxx_linux-64              7.3.0               h553295d_17    conda-forge
h5py                      2.10.0           py36h7918eee_0    https://mirrors.bfsu.edu.cn/anaconda/pkgs/main
harfbuzz                  4.3.0                hf52aaf7_1    anaconda
hdf5                      1.10.4          nompi_h3c11f04_1106    conda-forge
htslib                    1.9                  h244ad75_9    bioconda
humanfriendly             10.0             py36h5fab9bb_0    conda-forge
icu                       58.2              hf484d3e_1000    conda-forge
idna                      3.6                pyhd8ed1ab_0    conda-forge
idna_ssl                  1.1.0           pyhd8ed1ab_1002    conda-forge
imagemagick               7.1.0_7         pl5321hb118871_0    conda-forge
importlib-metadata        4.8.1            py36h5fab9bb_0    conda-forge
intel-openmp              2023.1.0         hdb19cb5_46306    anaconda
jbig                      2.1               h7f98852_2003    conda-forge
jemalloc                  5.3.0                hcb278e6_0    conda-forge
jinja2                    3.0.3              pyhd8ed1ab_0    conda-forge
jmespath                  0.10.0             pyh9f0ad1d_0    conda-forge
joblib                    1.2.0              pyhd8ed1ab_0    https://mirrors.bfsu.edu.cn./anaconda/cloud/conda-forge
jpeg                      9e                   h0b41bf4_3    conda-forge
jsonschema                4.1.2              pyhd8ed1ab_0    conda-forge
kallisto                  0.46.0               hb6a4e58_0    bioconda
keras-preprocessing       1.1.2              pyhd8ed1ab_0    https://mirrors.bfsu.edu.cn./anaconda/cloud/conda-forge
keyutils                  1.6.1                h166bdaf_0    conda-forge
kiwisolver                1.3.1            py36h605e78d_1    conda-forge
krb5                      1.20.1               hf9c8cef_0    conda-forge
ld_impl_linux-64          2.33.1               h53a641e_7    conda-forge
lerc                      4.0.0                h27087fc_0    conda-forge
libblas                   3.9.0           1_h6e990d7_netlib    https://mirrors.bfsu.edu.cn./anaconda/cloud/conda-forge
libboost                  1.73.0              h28710b8_12    anaconda
libcblas                  3.9.0           3_h893e4fe_netlib    https://mirrors.bfsu.edu.cn./anaconda/cloud/conda-forge
libcrc32c                 1.1.2                h9c3ff4c_0    conda-forge
libcurl                   7.87.0               h6312ad2_0    conda-forge
libdb                     6.2.32               h9c3ff4c_0    conda-forge
libdeflate                1.14                 h166bdaf_0    conda-forge
libedit                   3.1.20191231         h46ee950_2    conda-forge
libev                     4.33                 hd590300_2    conda-forge
libexpat                  2.5.0                hcb278e6_1    conda-forge
libffi                    3.4.2                h7f98852_5    conda-forge
libgcc                    7.2.0                h69d50b8_2    conda-forge
libgcc-ng                 13.2.0               h807b86a_4    conda-forge
libgd                     2.3.3                h695aa2c_1    anaconda
libgfortran-ng            7.5.0               h14aa051_20    conda-forge
libgfortran4              7.5.0               h14aa051_20    conda-forge
libglib                   2.78.3               h783c2da_0    conda-forge
libgomp                   13.2.0               h807b86a_4    conda-forge
libiconv                  1.17                 hd590300_2    conda-forge
libidn2                   2.3.7                hd590300_0    conda-forge
libjemalloc               5.3.0                hcb278e6_0    conda-forge
libnghttp2                1.51.0               hdcd2b5c_0    conda-forge
libpng                    1.6.39               h753d276_0    conda-forge
libprotobuf               3.18.0               h780b84a_1    conda-forge
librsvg                   2.54.4               h7abd40a_0    conda-forge
libsodium                 1.0.18               h36c2ea0_1    conda-forge
libsqlite                 3.44.2               h2797004_0    conda-forge
libssh2                   1.10.0               haa6b8db_3    conda-forge
libstdcxx-ng              13.2.0               h7e041cc_4    conda-forge
libtiff                   4.4.0                h82bc61c_5    conda-forge
libtool                   2.4.7                h27087fc_0    conda-forge
libunistring              0.9.10               h7f98852_0    conda-forge
libuuid                   2.38.1               h0b41bf4_0    conda-forge
libwebp                   1.3.2                h11a3e52_0    anaconda
libwebp-base              1.3.2                hd590300_0    conda-forge
libxcb                    1.15                 h0b41bf4_0    conda-forge
libxcrypt                 4.4.36               hd590300_1    conda-forge
libxml2                   2.9.14               h74e7548_0    anaconda
libzlib                   1.2.13               hd590300_5    conda-forge
llvm-openmp               8.0.1                hc9558a2_0    conda-forge
lzstring                  1.0.4                   py_1001    conda-forge
markdown                  3.5.2              pyhd8ed1ab_0    conda-forge
markupsafe                2.0.1            py36h8f6f2f9_0    conda-forge
matplotlib-base           3.1.3            py36hef1b27d_0    anaconda
mhcflurry                 2.0.1              pyh864c0ab_0    https://mirrors.bfsu.edu.cn/anaconda/cloud/bioconda
mhcnames                  0.4.8              pyh864c0ab_1    https://mirrors.bfsu.edu.cn/anaconda/cloud/bioconda
mkl                       2019.4                      243    anaconda
mkl-service               2.3.0            py36h516909a_0    conda-forge
mkl_fft                   1.1.0            py36hc1659b7_1    conda-forge
mkl_random                1.1.0            py36hb3f55d8_0    conda-forge
msisensor                 0.5                  hd0b41b6_0    bioconda
multidict                 5.2.0            py36h8f6f2f9_0    conda-forge
multiqc                   1.9                        py_1    bioconda
ncbi-vdb                  3.0.10               hdbdd923_0    bioconda
ncurses                   6.1               hf484d3e_1002    conda-forge
networkx                  2.5.1              pyhd8ed1ab_0    conda-forge
np_utils                  0.5.12.1           pyh9f0ad1d_0    https://mirrors.bfsu.edu.cn./anaconda/cloud/conda-forge
numpy                     1.19.1           py36hbc911f0_0    anaconda
numpy-base                1.19.1           py36hfa32c7d_0    anaconda
oauthlib                  3.2.2              pyhd8ed1ab_0    https://mirrors.bfsu.edu.cn./anaconda/cloud/conda-forge
openjdk                   8.0.382              hd590300_0    conda-forge
openjpeg                  2.5.0                h7d73246_1    conda-forge
openmp                    8.0.1                         0    conda-forge
openssl                   1.1.1w               hd590300_0    conda-forge
opt_einsum                3.3.0              pyhc1e730c_2    https://mirrors.bfsu.edu.cn./anaconda/cloud/conda-forge
ossuuid                   1.6.2             hf484d3e_1000    conda-forge
pandas                    1.0.5                    pypi_0    pypi
pango                     1.50.7               hbd2fdc8_0    conda-forge
paramiko                  2.12.0             pyhd8ed1ab_0    conda-forge
pbzip2                    1.1.13               h1fcc475_2    conda-forge
pcre                      8.45                 h9c3ff4c_0    conda-forge
pcre2                     10.42                hcad00b1_0    conda-forge
perl                      5.32.1          7_hd590300_perl5    conda-forge
perl-alien-build          2.48            pl5321hec16e2b_0    bioconda
perl-alien-libxml2        0.17            pl5321hec16e2b_0    bioconda
perl-archive-tar          2.40            pl5321hdfd78af_0    bioconda
perl-business-isbn        3.007           pl5321hdfd78af_0    bioconda
perl-business-isbn-data   20210112.006    pl5321hdfd78af_0    bioconda
perl-capture-tiny         0.48            pl5321hdfd78af_2    bioconda
perl-carp                 1.38            pl5321hdfd78af_4    bioconda
perl-common-sense         3.75            pl5321hdfd78af_0    bioconda
perl-compress-raw-bzip2   2.201           pl5321h87f3376_1    bioconda
perl-compress-raw-zlib    2.105           pl5321h87f3376_0    bioconda
perl-constant             1.33            pl5321hdfd78af_2    bioconda
perl-data-dumper          2.183           pl5321hec16e2b_1    bioconda
perl-db-file              1.855           pl5321h779adbc_1    bioconda
perl-encode               3.19            pl5321hec16e2b_1    bioconda
perl-exporter             5.72            pl5321hdfd78af_2    bioconda
perl-exporter-tiny        1.002002        pl5321hdfd78af_0    bioconda
perl-extutils-makemaker   7.70            pl5321hd8ed1ab_0    conda-forge
perl-ffi-checklib         0.28            pl5321hdfd78af_0    bioconda
perl-file-chdir           0.1010          pl5321hdfd78af_3    bioconda
perl-file-path            2.18            pl5321hd8ed1ab_0    conda-forge
perl-file-temp            0.2304          pl5321hd8ed1ab_0    conda-forge
perl-file-util            4.201720        pl5321hdfd78af_0    bioconda
perl-file-which           1.24            pl5321hd8ed1ab_0    conda-forge
perl-importer             0.026           pl5321hdfd78af_0    bioconda
perl-io-compress          2.201           pl5321hdbdd923_2    bioconda
perl-io-gzip              0.20            pl5321h7132678_4    bioconda
perl-io-zlib              1.14            pl5321hdfd78af_0    bioconda
perl-json                 4.10            pl5321hdfd78af_0    bioconda
perl-json-xs              2.34            pl5321h4ac6f70_6    bioconda
perl-lib                  0.63            pl5321hdfd78af_2    bioconda
perl-list-moreutils       0.430           pl5321hdfd78af_0    bioconda
perl-list-moreutils-xs    0.430           pl5321h031d066_2    bioconda
perl-mime-base64          3.16            pl5321hec16e2b_2    bioconda
perl-parent               0.236           pl5321hdfd78af_2    bioconda
perl-path-tiny            0.122           pl5321hdfd78af_0    bioconda
perl-pathtools            3.75            pl5321hec16e2b_3    bioconda
perl-scalar-list-utils    1.62            pl5321hec16e2b_1    bioconda
perl-scope-guard          0.21            pl5321hdfd78af_3    bioconda
perl-set-intervaltree     0.12            pl5321hdbdd923_3    bioconda
perl-sub-info             0.002           pl5321hdfd78af_1    bioconda
perl-term-table           0.016           pl5321hdfd78af_0    bioconda
perl-test2-suite          0.000145        pl5321hdfd78af_0    bioconda
perl-types-serialiser     1.01            pl5321hdfd78af_0    bioconda
perl-uri                  5.12            pl5321hdfd78af_0    bioconda
perl-xml-libxml           2.0207          pl5321h661654b_0    bioconda
perl-xml-namespacesupport 1.12            pl5321hdfd78af_1    bioconda
perl-xml-sax              1.02            pl5321hdfd78af_1    bioconda
perl-xml-sax-base         1.09            pl5321hdfd78af_1    bioconda
picard                    2.21.4                        0    bioconda
pigz                      2.4                  h84994c4_0    anaconda
pip                       20.2.2                   py36_0    anaconda
pixman                    0.38.0            h516909a_1003    conda-forge
pkg-config                0.29.2            h36c2ea0_1008    conda-forge
ply                       3.11                       py_1    conda-forge
prettytable               2.5.0              pyhd8ed1ab_0    conda-forge
progressbar33             2.4                        py_0    https://mirrors.bfsu.edu.cn./anaconda/cloud/conda-forge
protobuf                  3.18.0           py36hc4f0c31_0    conda-forge
psutil                    5.8.0            py36h8f6f2f9_1    conda-forge
pthread-stubs             0.4               h36c2ea0_1001    conda-forge
pyasn1                    0.5.1              pyhd8ed1ab_0    conda-forge
pyasn1-modules            0.3.0              pyhd8ed1ab_0    conda-forge
pybigwig                  0.3.17           py36hc013797_0    bioconda
pycparser                 2.21               pyhd8ed1ab_0    conda-forge
pygments                  2.14.0             pyhd8ed1ab_0    conda-forge
pygraphviz                1.3.1                    py36_0    bioconda
pyjwt                     2.8.0              pyhd8ed1ab_0    https://mirrors.bfsu.edu.cn./anaconda/cloud/conda-forge
pynacl                    1.4.0            py36h8f6f2f9_2    conda-forge
pyopenssl                 22.0.0             pyhd8ed1ab_1    conda-forge
pyparsing                 3.1.1              pyhd8ed1ab_0    conda-forge
pyrsistent                0.17.3           py36h8f6f2f9_2    conda-forge
pysam                     0.8.3            py36h84994c4_6    bioconda
pysftp                    0.2.9                    py36_0    bioconda
pysocks                   1.7.1            py36h5fab9bb_3    conda-forge
python                    3.6.10               h0371630_0    anaconda
python-dateutil           2.8.2              pyhd8ed1ab_0    conda-forge
python-irodsclient        1.1.9              pyhd8ed1ab_0    conda-forge
python_abi                3.6                     2_cp36m    conda-forge
pytz                      2023.3.post1       pyhd8ed1ab_0    conda-forge
pyu2f                     0.1.5              pyhd8ed1ab_0    conda-forge
pyyaml                    5.4.1            py36h8f6f2f9_1    conda-forge
r-base                    3.4.3                h9bb98a2_5    defaults
ratelimiter               1.2.0           pyhd8ed1ab_1003    conda-forge
readline                  7.0               hf8c457e_1001    conda-forge
requests                  2.28.1             pyhd8ed1ab_0    conda-forge
requests-oauthlib         1.3.1              pyhd8ed1ab_0    https://mirrors.bfsu.edu.cn./anaconda/cloud/conda-forge
rsa                       3.1.4                    py36_0    bioconda
s3transfer                0.5.2              pyhd8ed1ab_0    conda-forge
salmon                    0.13.1               h86b0361_0    bioconda
sambamba                  0.6.6                         2    bioconda
samtools                  1.9                 h10a08f8_12    bioconda
scikit-learn              0.24.0           py36he4fde30_0    https://mirrors.bfsu.edu.cn./anaconda/cloud/conda-forge
scipy                     1.5.0            py36h0b6359f_0    anaconda
setuptools                58.0.4           py36h5fab9bb_2    conda-forge
simplejson                3.8.1                    py36_0    bioconda
six                       1.16.0             pyh6c4a22f_0    conda-forge
smmap                     3.0.5              pyh44b312d_0    conda-forge
snakemake                 5.5.4                         2    bioconda
snakemake-minimal         5.5.4                      py_2    bioconda
spectra                   0.0.11                     py_1    conda-forge
sqlite                    3.31.1               h7b6447c_0    anaconda
star                      2.6.1d                        0    bioconda
star-fusion               1.5.0                         0    bioconda
stone                     3.3.1              pyhd8ed1ab_0    conda-forge
tbb                       2020.2               h4bd325d_4    conda-forge
tensorboard               2.11.2             pyhd8ed1ab_0    https://mirrors.bfsu.edu.cn./anaconda/cloud/conda-forge
tensorboard-data-server   0.6.0            py36hc39840e_0    https://mirrors.bfsu.edu.cn./anaconda/cloud/conda-forge
tensorboard-plugin-wit    1.8.1              pyhd8ed1ab_0    https://mirrors.bfsu.edu.cn./anaconda/cloud/conda-forge
tensorflow                2.2.0           mkl_py36h5a57954_0    https://mirrors.bfsu.edu.cn/anaconda/pkgs/main
tensorflow-base           2.2.0           mkl_py36hd506778_0    https://mirrors.bfsu.edu.cn/anaconda/pkgs/main
tensorflow-estimator      2.6.0            py36hc4f0c31_0    https://mirrors.bfsu.edu.cn./anaconda/cloud/conda-forge
termcolor                 1.1.0              pyhd8ed1ab_3    https://mirrors.bfsu.edu.cn./anaconda/cloud/conda-forge
threadpoolctl             3.1.0              pyh8a188c0_0    https://mirrors.bfsu.edu.cn./anaconda/cloud/conda-forge
tidepy                    1.3.6                    pypi_0    pypi
tk                        8.6.13          noxft_h4845f30_101    conda-forge
tktable                   2.10                 h0c5db8f_5    conda-forge
tornado                   6.1              py36h8f6f2f9_1    conda-forge
tqdm                      4.7.2                    py36_0    https://mirrors.bfsu.edu.cn/anaconda/cloud/bioconda
trust4                    1.0.5.1              h2e03b76_0    bioconda
typing-extensions         4.1.1                hd8ed1ab_0    conda-forge
typing_extensions         4.1.1              pyha770c72_0    conda-forge
urllib3                   1.26.15            pyhd8ed1ab_0    conda-forge
wcwidth                   0.2.10             pyhd8ed1ab_0    conda-forge
werkzeug                  2.0.2              pyhd8ed1ab_0    https://mirrors.bfsu.edu.cn./anaconda/cloud/conda-forge
wget                      1.20.3               ha56f1ee_1    conda-forge
wheel                     0.37.1             pyhd8ed1ab_0    conda-forge
wrapt                     1.13.1           py36h8f6f2f9_0    conda-forge
xorg-kbproto              1.0.7             h7f98852_1002    conda-forge
xorg-libice               1.1.1                hd590300_0    conda-forge
xorg-libsm                1.2.4                h7391055_0    conda-forge
xorg-libx11               1.8.7                h8ee46fc_0    conda-forge
xorg-libxau               1.0.11               hd590300_0    conda-forge
xorg-libxdmcp             1.1.3                h7f98852_0    conda-forge
xorg-libxext              1.3.4                h0b41bf4_2    conda-forge
xorg-libxrender           0.9.11               hd590300_0    conda-forge
xorg-libxt                1.3.0                hd590300_1    conda-forge
xorg-renderproto          0.11.1            h7f98852_1002    conda-forge
xorg-xextproto            7.3.0             h0b41bf4_1003    conda-forge
xorg-xproto               7.0.31            h7f98852_1007    conda-forge
xz                        5.2.6                h166bdaf_0    conda-forge
yaml                      0.2.5                h7f98852_2    conda-forge
yarl                      1.6.3            py36h8f6f2f9_2    conda-forge
zipp                      3.6.0              pyhd8ed1ab_0    conda-forge
zlib                      1.2.13               hd590300_5    conda-forge
zstd                      1.5.5                hfc55251_0    conda-forge
$ pip list
Package                       Version
----------------------------- ------------
absl-py                       2.0.0
aioeasywebdav                 2.4.0
aiohttp                       3.7.4.post0
appdirs                       1.4.4
astor                         0.8.1
astunparse                    1.6.3
async-timeout                 3.0.1
attrs                         22.2.0
backports.functools-lru-cache 2.0.0
bcrypt                        3.2.0
biopython                     1.76
blinker                       1.5
boto3                         1.21.32
botocore                      1.24.32
brotlipy                      0.7.0
cachetools                    5.0.0
certifi                       2021.5.30
cffi                          1.14.6
chardet                       4.0.0
charset-normalizer            2.1.1
click                         8.0.1
coloredlogs                   15.0.1
colormath                     3.0.0
ConfigArgParse                1.7
cryptography                  35.0.0
cycler                        0.11.0
dataclasses                   0.8
datrie                        0.8.2
decorator                     4.4.2
defusedxml                    0.7.1
docutils                      0.17.1
dropbox                       11.36.2
filechunkio                   1.6
ftputil                       3.2
future                        0.18.2
gast                          0.3.3
gitdb                         4.0.10
GitPython                     3.1.18
google-api-core               2.8.0
google-auth                   2.23.0
google-auth-oauthlib          0.4.6
google-cloud-core             2.3.1
google-cloud-storage          2.10.0
google-crc32c                 1.1.2
google-pasta                  0.2.0
google-resumable-media        2.3.3
googleapis-common-protos      1.53.0
grpcio                        1.38.1
h5py                          2.10.0
humanfriendly                 10.0
idna                          3.6
idna-ssl                      1.1.0
importlib-metadata            4.8.1
Jinja2                        3.0.3
jmespath                      0.10.0
joblib                        1.2.0
jsonschema                    4.1.2
Keras-Preprocessing           1.1.2
kiwisolver                    1.3.1
lzstring                      1.0.4
Markdown                      3.5.2
MarkupSafe                    2.0.1
matplotlib                    3.1.3
mhcflurry                     2.0.1
mhcnames                      0.4.8
mkl-fft                       1.1.0
mkl-random                    1.1.0
mkl-service                   2.3.0
multidict                     5.2.0
multiqc                       1.9
networkx                      2.5.1
np-utils                      0.5.12.1
numpy                         1.19.1
oauthlib                      3.2.2
opt-einsum                    3.3.0
pandas                        1.0.5
paramiko                      2.12.0
pip                           20.2.2
ply                           3.11
prettytable                   2.5.0
progressbar33                 2.4
protobuf                      3.18.0
psutil                        5.8.0
pyasn1                        0.5.1
pyasn1-modules                0.3.0
pyBigWig                      0.3.17
pycparser                     2.21
Pygments                      2.14.0
pygraphviz                    1.3.1
PyJWT                         2.8.0
PyNaCl                        1.4.0
pyOpenSSL                     22.0.0
pyparsing                     3.1.1
pyrsistent                    0.17.3
pysam                         0.8.3
pysftp                        0.2.9
PySocks                       1.7.1
python-dateutil               2.8.2
python-irodsclient            1.1.9
pytz                          2023.3.post1
pyu2f                         0.1.5
PyYAML                        5.4.1
ratelimiter                   1.2.0
requests                      2.28.1
requests-oauthlib             1.3.1
rsa                           3.1.4
s3transfer                    0.5.2
scikit-learn                  0.24.0
scipy                         1.5.0
setuptools                    58.0.4
simplejson                    3.8.1
six                           1.16.0
smmap                         3.0.5
snakemake                     5.5.4
spectra                       0.0.11
stone                         3.3.1
tensorboard                   2.11.2
tensorboard-data-server       0.6.0
tensorboard-plugin-wit        1.8.1
tensorflow                    2.2.0
tensorflow-estimator          2.6.0
termcolor                     1.1.0
threadpoolctl                 3.1.0
tidepy                        1.3.6
tornado                       6.1
tqdm                          4.7.2
typing-extensions             4.1.1
urllib3                       1.26.15
wcwidth                       0.2.10
Werkzeug                      2.0.2
wheel                         0.37.1
wrapt                         1.13.1
yarl                          1.6.3
zipp                          3.6.0
sunqiangzai commented 3 months ago

I run out to the same issue.

lisch7 commented 3 months ago

I tried to install RIMA for many times. Finally, I installed three environments successfully and worked fine. The environment named "stat_perl_r" always could not work fine. I listed my environment of RIMA for you @sunqiangzai to be a reference:

conda list
# packages in environment at /home/mailab003/biosoft/miniconda3/envs/RIMA:
#
# Name                    Version                   Build  Channel
_libgcc_mutex             0.1                 conda_forge    https://mirrors.tuna.tsinghua.edu.cn/anaconda/cloud/conda-forge
_openmp_mutex             4.5                       2_gnu    https://mirrors.tuna.tsinghua.edu.cn/anaconda/cloud/conda-forge
_r-mutex                  1.0.1               anacondar_1    https://mirrors.tuna.tsinghua.edu.cn/anaconda/cloud/conda-forge
_tflow_select             2.3.0                       mkl    https://mirrors.bfsu.edu.cn/anaconda/pkgs/main
absl-py                   1.4.0                    pypi_0    pypi
aioeasywebdav             2.4.0           py36h5fab9bb_1001    https://mirrors.tuna.tsinghua.edu.cn/anaconda/cloud/conda-forge
aiohttp                   3.7.4.post0      py36h8f6f2f9_0    https://mirrors.tuna.tsinghua.edu.cn/anaconda/cloud/conda-forge
appdirs                   1.4.4              pyh9f0ad1d_0    https://mirrors.tuna.tsinghua.edu.cn/anaconda/cloud/conda-forge
astor                     0.8.1              pyh9f0ad1d_0    https://mirrors.bfsu.edu.cn./anaconda/cloud/conda-forge
astroid                   2.5.6            py36h06a4308_1    https://mirrors.bfsu.edu.cn/anaconda/pkgs/main
astunparse                1.6.3              pyhd8ed1ab_0    https://mirrors.bfsu.edu.cn./anaconda/cloud/conda-forge
async-timeout             3.0.1                   py_1000    https://mirrors.tuna.tsinghua.edu.cn/anaconda/cloud/conda-forge
atk-1.0                   2.38.0               hd4edc92_1    https://mirrors.tuna.tsinghua.edu.cn/anaconda/cloud/conda-forge
attrs                     22.2.0             pyh71513ae_0    https://mirrors.tuna.tsinghua.edu.cn/anaconda/cloud/conda-forge
backports                 1.0                pyhd8ed1ab_3    https://mirrors.tuna.tsinghua.edu.cn/anaconda/cloud/conda-forge
backports.functools_lru_cache 2.0.0              pyhd8ed1ab_0    https://mirrors.tuna.tsinghua.edu.cn/anaconda/cloud/conda-forge
bbmap                     39.01                h92535d8_1    https://mirrors.tuna.tsinghua.edu.cn/anaconda/cloud/bioconda
bcrypt                    3.2.0            py36h8f6f2f9_1    https://mirrors.tuna.tsinghua.edu.cn/anaconda/cloud/conda-forge
bedtools                  2.29.1               hc088bd4_1    https://mirrors.tuna.tsinghua.edu.cn/anaconda/cloud/bioconda
binutils_impl_linux-64    2.33.1               he1b5a44_7    https://mirrors.tuna.tsinghua.edu.cn/anaconda/cloud/conda-forge
binutils_linux-64         2.33.1              h9595d00_17    https://mirrors.tuna.tsinghua.edu.cn/anaconda/cloud/conda-forge
biopython                 1.76             py36h516909a_0    https://mirrors.bfsu.edu.cn./anaconda/cloud/conda-forge
blas                      1.0                         mkl    https://mirrors.tuna.tsinghua.edu.cn/anaconda/cloud/conda-forge
blast                     2.15.0          pl5321h6f7f691_1    https://mirrors.tuna.tsinghua.edu.cn/anaconda/cloud/bioconda
blinker                   1.5                pyhd8ed1ab_0    https://mirrors.bfsu.edu.cn./anaconda/cloud/conda-forge
boto3                     1.21.32            pyhd8ed1ab_0    https://mirrors.tuna.tsinghua.edu.cn/anaconda/cloud/conda-forge
botocore                  1.24.32            pyhd3eb1b0_0    anaconda
bowtie                    1.3.1            py36h769816f_3    https://mirrors.tuna.tsinghua.edu.cn/anaconda/cloud/bioconda
brotlipy                  0.7.0           py36h8f6f2f9_1001    https://mirrors.tuna.tsinghua.edu.cn/anaconda/cloud/conda-forge
bwidget                   1.9.14               ha770c72_1    https://mirrors.tuna.tsinghua.edu.cn/anaconda/cloud/conda-forge
bzip2                     1.0.8                hd590300_5    https://mirrors.tuna.tsinghua.edu.cn/anaconda/cloud/conda-forge
c-ares                    1.26.0               hd590300_0    https://mirrors.tuna.tsinghua.edu.cn/anaconda/cloud/conda-forge
ca-certificates           2023.11.17           hbcca054_0    https://mirrors.tuna.tsinghua.edu.cn/anaconda/cloud/conda-forge
cachetools                4.2.4                    pypi_0    pypi
cairo                     1.16.0            h18b612c_1001    https://mirrors.tuna.tsinghua.edu.cn/anaconda/cloud/conda-forge
certifi                   2021.5.30        py36h5fab9bb_0    https://mirrors.tuna.tsinghua.edu.cn/anaconda/cloud/conda-forge
cffi                      1.14.6           py36hd8eec40_1    https://mirrors.tuna.tsinghua.edu.cn/anaconda/cloud/conda-forge
chardet                   4.0.0            py36h5fab9bb_1    https://mirrors.tuna.tsinghua.edu.cn/anaconda/cloud/conda-forge
charset-normalizer        2.0.12             pyhd8ed1ab_0    https://mirrors.bfsu.edu.cn./anaconda/cloud/conda-forge
click                     8.0.1            py36h5fab9bb_0    https://mirrors.tuna.tsinghua.edu.cn/anaconda/cloud/conda-forge
colorama                  0.4.5              pyhd8ed1ab_0    https://mirrors.bfsu.edu.cn./anaconda/cloud/conda-forge
coloredlogs               15.0.1           py36h5fab9bb_1    https://mirrors.tuna.tsinghua.edu.cn/anaconda/cloud/conda-forge
colormath                 3.0.0                      py_2    https://mirrors.tuna.tsinghua.edu.cn/anaconda/cloud/conda-forge
configargparse            1.7                pyhd8ed1ab_0    https://mirrors.tuna.tsinghua.edu.cn/anaconda/cloud/conda-forge
cryptography              35.0.0           py36hb60f036_0    https://mirrors.tuna.tsinghua.edu.cn/anaconda/cloud/conda-forge
curl                      7.87.0               h6312ad2_0    https://mirrors.tuna.tsinghua.edu.cn/anaconda/cloud/conda-forge
cycler                    0.11.0             pyhd8ed1ab_0    https://mirrors.tuna.tsinghua.edu.cn/anaconda/cloud/conda-forge
datacache                 1.1.5                      py_0    https://mirrors.bfsu.edu.cn./anaconda/cloud/conda-forge
dataclasses               0.8                pyh787bdff_2    https://mirrors.bfsu.edu.cn./anaconda/cloud/conda-forge
datrie                    0.8.2            py36h8f6f2f9_2    https://mirrors.tuna.tsinghua.edu.cn/anaconda/cloud/conda-forge
decorator                 4.4.2                      py_0    https://mirrors.tuna.tsinghua.edu.cn/anaconda/cloud/conda-forge
defusedxml                0.7.1              pyhd8ed1ab_0    https://mirrors.tuna.tsinghua.edu.cn/anaconda/cloud/conda-forge
docutils                  0.17.1           py36h5fab9bb_0    https://mirrors.tuna.tsinghua.edu.cn/anaconda/cloud/conda-forge
dropbox                   11.36.2            pyhd8ed1ab_0    https://mirrors.tuna.tsinghua.edu.cn/anaconda/cloud/conda-forge
entrez-direct             16.2                 he881be0_1    https://mirrors.tuna.tsinghua.edu.cn/anaconda/cloud/bioconda
expat                     2.5.0                hcb278e6_1    https://mirrors.tuna.tsinghua.edu.cn/anaconda/cloud/conda-forge
fftw                      3.3.9                h27cfd23_1    anaconda
filechunkio               1.6                      py36_0    https://mirrors.tuna.tsinghua.edu.cn/anaconda/cloud/bioconda
font-ttf-dejavu-sans-mono 2.37                 hab24e00_0    https://mirrors.tuna.tsinghua.edu.cn/anaconda/cloud/conda-forge
font-ttf-inconsolata      3.000                h77eed37_0    https://mirrors.tuna.tsinghua.edu.cn/anaconda/cloud/conda-forge
font-ttf-source-code-pro  2.038                h77eed37_0    https://mirrors.tuna.tsinghua.edu.cn/anaconda/cloud/conda-forge
font-ttf-ubuntu           0.83                 h77eed37_1    https://mirrors.tuna.tsinghua.edu.cn/anaconda/cloud/conda-forge
fontconfig                2.14.2               h14ed4e7_0    https://mirrors.tuna.tsinghua.edu.cn/anaconda/cloud/conda-forge
fonts-conda-ecosystem     1                             0    https://mirrors.tuna.tsinghua.edu.cn/anaconda/cloud/conda-forge
fonts-conda-forge         1                             0    https://mirrors.tuna.tsinghua.edu.cn/anaconda/cloud/conda-forge
freetype                  2.12.1               h267a509_2    https://mirrors.tuna.tsinghua.edu.cn/anaconda/cloud/conda-forge
fribidi                   1.0.10               h36c2ea0_0    https://mirrors.tuna.tsinghua.edu.cn/anaconda/cloud/conda-forge
ftputil                   3.2                      py36_0    https://mirrors.tuna.tsinghua.edu.cn/anaconda/cloud/bioconda
future                    0.18.2           py36h5fab9bb_3    https://mirrors.tuna.tsinghua.edu.cn/anaconda/cloud/conda-forge
gast                      0.3.3                      py_0    https://mirrors.bfsu.edu.cn./anaconda/cloud/conda-forge
gatk4                     4.1.4.1                       0    https://mirrors.tuna.tsinghua.edu.cn/anaconda/cloud/bioconda
gcc_impl_linux-64         7.3.0                habb00fd_1    defaults
gcc_linux-64              7.3.0               h553295d_17    https://mirrors.tuna.tsinghua.edu.cn/anaconda/cloud/conda-forge
gdk-pixbuf                2.42.8               hff1cb4f_1    https://mirrors.tuna.tsinghua.edu.cn/anaconda/cloud/conda-forge
gettext                   0.21.1               h27087fc_0    https://mirrors.tuna.tsinghua.edu.cn/anaconda/cloud/conda-forge
gfortran_impl_linux-64    7.3.0                hdf63c60_1    anaconda
gfortran_linux-64         7.3.0               h553295d_17    https://mirrors.tuna.tsinghua.edu.cn/anaconda/cloud/conda-forge
ghostscript               9.18                          1    https://mirrors.tuna.tsinghua.edu.cn/anaconda/cloud/bioconda
giflib                    5.2.1                h0b41bf4_3    https://mirrors.tuna.tsinghua.edu.cn/anaconda/cloud/conda-forge
gitdb                     4.0.10             pyhd8ed1ab_0    https://mirrors.tuna.tsinghua.edu.cn/anaconda/cloud/conda-forge
gitpython                 3.1.18             pyhd8ed1ab_0    https://mirrors.tuna.tsinghua.edu.cn/anaconda/cloud/conda-forge
glib                      2.78.3               hfc55251_0    https://mirrors.tuna.tsinghua.edu.cn/anaconda/cloud/conda-forge
glib-tools                2.78.3               hfc55251_0    https://mirrors.tuna.tsinghua.edu.cn/anaconda/cloud/conda-forge
gmap                      2023.10.10           h9d449c0_1    https://mirrors.tuna.tsinghua.edu.cn/anaconda/cloud/bioconda
google-api-core           2.8.0              pyhd8ed1ab_1    https://mirrors.tuna.tsinghua.edu.cn/anaconda/cloud/conda-forge
google-auth               1.35.0                   pypi_0    pypi
google-auth-oauthlib      0.4.6              pyhd8ed1ab_0    https://mirrors.bfsu.edu.cn./anaconda/cloud/conda-forge
google-cloud-core         2.3.1              pyhd8ed1ab_0    https://mirrors.tuna.tsinghua.edu.cn/anaconda/cloud/conda-forge
google-cloud-storage      2.10.0             pyh1a96a4e_0    https://mirrors.tuna.tsinghua.edu.cn/anaconda/cloud/conda-forge
google-crc32c             1.1.2            py36h0208b43_0    https://mirrors.tuna.tsinghua.edu.cn/anaconda/cloud/conda-forge
google-pasta              0.2.0              pyh8c360ce_0    https://mirrors.bfsu.edu.cn./anaconda/cloud/conda-forge
google-resumable-media    2.3.3              pyhd8ed1ab_0    https://mirrors.tuna.tsinghua.edu.cn/anaconda/cloud/conda-forge
googleapis-common-protos  1.53.0           py36h5fab9bb_0    https://mirrors.tuna.tsinghua.edu.cn/anaconda/cloud/conda-forge
graphite2                 1.3.14               h295c915_1    anaconda
graphviz                  2.50.0               h8e749b2_2    https://mirrors.tuna.tsinghua.edu.cn/anaconda/cloud/conda-forge
grpcio                    1.38.1           py36h8e87921_0    https://mirrors.tuna.tsinghua.edu.cn/anaconda/cloud/conda-forge
gtfparse                  1.2.1              pyh864c0ab_0    https://mirrors.bfsu.edu.cn/anaconda/cloud/bioconda
gtk2                      2.24.33              h90689f9_2    https://mirrors.tuna.tsinghua.edu.cn/anaconda/cloud/conda-forge
gts                       0.7.6                h977cf35_4    https://mirrors.tuna.tsinghua.edu.cn/anaconda/cloud/conda-forge
gxx_impl_linux-64         7.3.0                hdf63c60_1    anaconda
gxx_linux-64              7.3.0               h553295d_17    https://mirrors.tuna.tsinghua.edu.cn/anaconda/cloud/conda-forge
h5py                      2.10.0           py36h7918eee_0    https://mirrors.bfsu.edu.cn/anaconda/pkgs/main
harfbuzz                  4.3.0                hf52aaf7_1    anaconda
hdf5                      1.10.4          nompi_h3c11f04_1106    https://mirrors.tuna.tsinghua.edu.cn/anaconda/cloud/conda-forge
htslib                    1.9                  h244ad75_9    https://mirrors.tuna.tsinghua.edu.cn/anaconda/cloud/bioconda
humanfriendly             10.0             py36h5fab9bb_0    https://mirrors.tuna.tsinghua.edu.cn/anaconda/cloud/conda-forge
icu                       58.2              hf484d3e_1000    https://mirrors.tuna.tsinghua.edu.cn/anaconda/cloud/conda-forge
idna                      3.6                pyhd8ed1ab_0    https://mirrors.tuna.tsinghua.edu.cn/anaconda/cloud/conda-forge
idna_ssl                  1.1.0           pyhd8ed1ab_1002    https://mirrors.tuna.tsinghua.edu.cn/anaconda/cloud/conda-forge
imagemagick               7.1.0_7         pl5321hb118871_0    https://mirrors.tuna.tsinghua.edu.cn/anaconda/cloud/conda-forge
importlib-metadata        4.8.1            py36h5fab9bb_0    https://mirrors.tuna.tsinghua.edu.cn/anaconda/cloud/conda-forge
intel-openmp              2023.1.0         hdb19cb5_46306    anaconda
isort                     5.10.1             pyhd8ed1ab_0    https://mirrors.bfsu.edu.cn./anaconda/cloud/conda-forge
jbig                      2.1               h7f98852_2003    https://mirrors.tuna.tsinghua.edu.cn/anaconda/cloud/conda-forge
jemalloc                  5.3.0                hcb278e6_0    https://mirrors.tuna.tsinghua.edu.cn/anaconda/cloud/conda-forge
jinja2                    3.0.3              pyhd8ed1ab_0    https://mirrors.tuna.tsinghua.edu.cn/anaconda/cloud/conda-forge
jmespath                  0.10.0             pyh9f0ad1d_0    https://mirrors.tuna.tsinghua.edu.cn/anaconda/cloud/conda-forge
joblib                    1.0.1              pyhd3eb1b0_0    anaconda
jpeg                      9e                   h0b41bf4_3    https://mirrors.tuna.tsinghua.edu.cn/anaconda/cloud/conda-forge
jsonschema                4.1.2              pyhd8ed1ab_0    https://mirrors.tuna.tsinghua.edu.cn/anaconda/cloud/conda-forge
kallisto                  0.46.0               hb6a4e58_0    https://mirrors.tuna.tsinghua.edu.cn/anaconda/cloud/bioconda
keras                     2.4.3              pyhd8ed1ab_0    https://mirrors.bfsu.edu.cn./anaconda/cloud/conda-forge
keras-preprocessing       1.1.2              pyhd8ed1ab_0    https://mirrors.bfsu.edu.cn./anaconda/cloud/conda-forge
keyutils                  1.6.1                h166bdaf_0    https://mirrors.tuna.tsinghua.edu.cn/anaconda/cloud/conda-forge
kiwisolver                1.3.1            py36h605e78d_1    https://mirrors.tuna.tsinghua.edu.cn/anaconda/cloud/conda-forge
krb5                      1.20.1               hf9c8cef_0    https://mirrors.tuna.tsinghua.edu.cn/anaconda/cloud/conda-forge
lazy-object-proxy         1.6.0            py36h8f6f2f9_0    https://mirrors.bfsu.edu.cn./anaconda/cloud/conda-forge
ld_impl_linux-64          2.33.1               h53a641e_7    https://mirrors.tuna.tsinghua.edu.cn/anaconda/cloud/conda-forge
lerc                      4.0.0                h27087fc_0    https://mirrors.tuna.tsinghua.edu.cn/anaconda/cloud/conda-forge
libblas                   3.9.0           1_h6e990d7_netlib    https://mirrors.bfsu.edu.cn./anaconda/cloud/conda-forge
libboost                  1.73.0              h28710b8_12    anaconda
libcblas                  3.9.0           3_h893e4fe_netlib    https://mirrors.bfsu.edu.cn./anaconda/cloud/conda-forge
libcrc32c                 1.1.2                h9c3ff4c_0    https://mirrors.tuna.tsinghua.edu.cn/anaconda/cloud/conda-forge
libcurl                   7.87.0               h6312ad2_0    https://mirrors.tuna.tsinghua.edu.cn/anaconda/cloud/conda-forge
libdb                     6.2.32               h9c3ff4c_0    https://mirrors.tuna.tsinghua.edu.cn/anaconda/cloud/conda-forge
libdeflate                1.14                 h166bdaf_0    https://mirrors.tuna.tsinghua.edu.cn/anaconda/cloud/conda-forge
libedit                   3.1.20191231         h46ee950_2    https://mirrors.tuna.tsinghua.edu.cn/anaconda/cloud/conda-forge
libev                     4.33                 hd590300_2    https://mirrors.tuna.tsinghua.edu.cn/anaconda/cloud/conda-forge
libexpat                  2.5.0                hcb278e6_1    https://mirrors.tuna.tsinghua.edu.cn/anaconda/cloud/conda-forge
libffi                    3.4.2                h7f98852_5    https://mirrors.tuna.tsinghua.edu.cn/anaconda/cloud/conda-forge
libgcc                    7.2.0                h69d50b8_2    https://mirrors.tuna.tsinghua.edu.cn/anaconda/cloud/conda-forge
libgcc-ng                 13.2.0               h807b86a_4    https://mirrors.tuna.tsinghua.edu.cn/anaconda/cloud/conda-forge
libgd                     2.3.3                h695aa2c_1    anaconda
libgfortran-ng            7.5.0               h14aa051_20    https://mirrors.tuna.tsinghua.edu.cn/anaconda/cloud/conda-forge
libgfortran4              7.5.0               h14aa051_20    https://mirrors.tuna.tsinghua.edu.cn/anaconda/cloud/conda-forge
libglib                   2.78.3               h783c2da_0    https://mirrors.tuna.tsinghua.edu.cn/anaconda/cloud/conda-forge
libgomp                   13.2.0               h807b86a_4    https://mirrors.tuna.tsinghua.edu.cn/anaconda/cloud/conda-forge
libiconv                  1.17                 hd590300_2    https://mirrors.tuna.tsinghua.edu.cn/anaconda/cloud/conda-forge
libidn2                   2.3.7                hd590300_0    https://mirrors.tuna.tsinghua.edu.cn/anaconda/cloud/conda-forge
libjemalloc               5.3.0                hcb278e6_0    https://mirrors.tuna.tsinghua.edu.cn/anaconda/cloud/conda-forge
libnghttp2                1.51.0               hdcd2b5c_0    https://mirrors.tuna.tsinghua.edu.cn/anaconda/cloud/conda-forge
libpng                    1.6.39               h753d276_0    https://mirrors.tuna.tsinghua.edu.cn/anaconda/cloud/conda-forge
libprotobuf               3.18.0               h780b84a_1    https://mirrors.tuna.tsinghua.edu.cn/anaconda/cloud/conda-forge
librsvg                   2.54.4               h7abd40a_0    https://mirrors.tuna.tsinghua.edu.cn/anaconda/cloud/conda-forge
libsodium                 1.0.18               h36c2ea0_1    https://mirrors.tuna.tsinghua.edu.cn/anaconda/cloud/conda-forge
libsqlite                 3.44.2               h2797004_0    https://mirrors.tuna.tsinghua.edu.cn/anaconda/cloud/conda-forge
libssh2                   1.10.0               haa6b8db_3    https://mirrors.tuna.tsinghua.edu.cn/anaconda/cloud/conda-forge
libstdcxx-ng              13.2.0               h7e041cc_4    https://mirrors.tuna.tsinghua.edu.cn/anaconda/cloud/conda-forge
libtiff                   4.4.0                h82bc61c_5    https://mirrors.tuna.tsinghua.edu.cn/anaconda/cloud/conda-forge
libtool                   2.4.7                h27087fc_0    https://mirrors.tuna.tsinghua.edu.cn/anaconda/cloud/conda-forge
libunistring              0.9.10               h7f98852_0    https://mirrors.tuna.tsinghua.edu.cn/anaconda/cloud/conda-forge
libuuid                   2.38.1               h0b41bf4_0    https://mirrors.tuna.tsinghua.edu.cn/anaconda/cloud/conda-forge
libwebp                   1.3.2                h11a3e52_0    anaconda
libwebp-base              1.3.2                hd590300_0    https://mirrors.tuna.tsinghua.edu.cn/anaconda/cloud/conda-forge
libxcb                    1.15                 h0b41bf4_0    https://mirrors.tuna.tsinghua.edu.cn/anaconda/cloud/conda-forge
libxcrypt                 4.4.36               hd590300_1    https://mirrors.tuna.tsinghua.edu.cn/anaconda/cloud/conda-forge
libxml2                   2.9.14               h74e7548_0    anaconda
libzlib                   1.2.13               hd590300_5    https://mirrors.tuna.tsinghua.edu.cn/anaconda/cloud/conda-forge
llvm-openmp               8.0.1                hc9558a2_0    https://mirrors.tuna.tsinghua.edu.cn/anaconda/cloud/conda-forge
lzstring                  1.0.4                   py_1001    https://mirrors.tuna.tsinghua.edu.cn/anaconda/cloud/conda-forge
markdown                  3.3.7                    pypi_0    pypi
markupsafe                2.0.1            py36h8f6f2f9_0    https://mirrors.tuna.tsinghua.edu.cn/anaconda/cloud/conda-forge
matplotlib-base           3.1.3            py36hef1b27d_0    anaconda
mccabe                    0.6.1                      py_1    https://mirrors.bfsu.edu.cn./anaconda/cloud/conda-forge
memoized-property         1.0.3                      py_0    https://mirrors.bfsu.edu.cn./anaconda/cloud/conda-forge
mhcflurry                 2.0.1              pyh864c0ab_0    https://mirrors.bfsu.edu.cn/anaconda/cloud/bioconda
mhcnames                  0.4.8              pyh864c0ab_1    https://mirrors.bfsu.edu.cn/anaconda/cloud/bioconda
mhcnuggets                2.4.1              pyh7cba7a3_0    bioconda
mhctools                  1.8.1                    pypi_0    pypi
mkl                       2019.4                      243    anaconda
mkl-service               2.3.0            py36h516909a_0    https://mirrors.tuna.tsinghua.edu.cn/anaconda/cloud/conda-forge
mkl_fft                   1.1.0            py36hc1659b7_1    https://mirrors.tuna.tsinghua.edu.cn/anaconda/cloud/conda-forge
mkl_random                1.1.0            py36hb3f55d8_0    https://mirrors.tuna.tsinghua.edu.cn/anaconda/cloud/conda-forge
mock                      5.1.0              pyhd8ed1ab_0    https://mirrors.bfsu.edu.cn./anaconda/cloud/conda-forge
msisensor                 0.5                  hd0b41b6_0    https://mirrors.tuna.tsinghua.edu.cn/anaconda/cloud/bioconda
multidict                 5.2.0            py36h8f6f2f9_0    https://mirrors.tuna.tsinghua.edu.cn/anaconda/cloud/conda-forge
multiqc                   1.9                        py_1    https://mirrors.tuna.tsinghua.edu.cn/anaconda/cloud/bioconda
ncbi-vdb                  3.0.10               hdbdd923_0    https://mirrors.tuna.tsinghua.edu.cn/anaconda/cloud/bioconda
ncurses                   6.1               hf484d3e_1002    https://mirrors.tuna.tsinghua.edu.cn/anaconda/cloud/conda-forge
networkx                  2.5.1              pyhd8ed1ab_0    https://mirrors.tuna.tsinghua.edu.cn/anaconda/cloud/conda-forge
np_utils                  0.5.12.1           pyh9f0ad1d_0    https://mirrors.bfsu.edu.cn./anaconda/cloud/conda-forge
numpy                     1.19.1           py36hbc911f0_0    anaconda
numpy-base                1.19.1           py36hfa32c7d_0    anaconda
oauthlib                  3.2.2              pyhd8ed1ab_0    https://mirrors.bfsu.edu.cn./anaconda/cloud/conda-forge
openjdk                   8.0.382              hd590300_0    https://mirrors.tuna.tsinghua.edu.cn/anaconda/cloud/conda-forge
openjpeg                  2.5.0                h7d73246_1    https://mirrors.tuna.tsinghua.edu.cn/anaconda/cloud/conda-forge
openmp                    8.0.1                         0    https://mirrors.tuna.tsinghua.edu.cn/anaconda/cloud/conda-forge
openssl                   1.1.1w               hd590300_0    https://mirrors.tuna.tsinghua.edu.cn/anaconda/cloud/conda-forge
opt_einsum                3.3.0              pyhc1e730c_2    https://mirrors.bfsu.edu.cn./anaconda/cloud/conda-forge
ossuuid                   1.6.2             hf484d3e_1000    https://mirrors.tuna.tsinghua.edu.cn/anaconda/cloud/conda-forge
pandas                    1.0.5                    pypi_0    pypi
pango                     1.50.7               hbd2fdc8_0    https://mirrors.tuna.tsinghua.edu.cn/anaconda/cloud/conda-forge
paramiko                  2.12.0             pyhd8ed1ab_0    https://mirrors.tuna.tsinghua.edu.cn/anaconda/cloud/conda-forge
pbzip2                    1.1.13               h1fcc475_2    https://mirrors.tuna.tsinghua.edu.cn/anaconda/cloud/conda-forge
pcre                      8.45                 h9c3ff4c_0    https://mirrors.tuna.tsinghua.edu.cn/anaconda/cloud/conda-forge
pcre2                     10.42                hcad00b1_0    https://mirrors.tuna.tsinghua.edu.cn/anaconda/cloud/conda-forge
perl                      5.32.1          7_hd590300_perl5    https://mirrors.tuna.tsinghua.edu.cn/anaconda/cloud/conda-forge
perl-alien-build          2.48            pl5321hec16e2b_0    https://mirrors.tuna.tsinghua.edu.cn/anaconda/cloud/bioconda
perl-alien-libxml2        0.17            pl5321hec16e2b_0    https://mirrors.tuna.tsinghua.edu.cn/anaconda/cloud/bioconda
perl-archive-tar          2.40            pl5321hdfd78af_0    https://mirrors.tuna.tsinghua.edu.cn/anaconda/cloud/bioconda
perl-business-isbn        3.007           pl5321hdfd78af_0    https://mirrors.tuna.tsinghua.edu.cn/anaconda/cloud/bioconda
perl-business-isbn-data   20210112.006    pl5321hdfd78af_0    https://mirrors.tuna.tsinghua.edu.cn/anaconda/cloud/bioconda
perl-capture-tiny         0.48            pl5321hdfd78af_2    https://mirrors.tuna.tsinghua.edu.cn/anaconda/cloud/bioconda
perl-carp                 1.38            pl5321hdfd78af_4    https://mirrors.tuna.tsinghua.edu.cn/anaconda/cloud/bioconda
perl-common-sense         3.75            pl5321hdfd78af_0    https://mirrors.tuna.tsinghua.edu.cn/anaconda/cloud/bioconda
perl-compress-raw-bzip2   2.201           pl5321h87f3376_1    https://mirrors.tuna.tsinghua.edu.cn/anaconda/cloud/bioconda
perl-compress-raw-zlib    2.105           pl5321h87f3376_0    https://mirrors.tuna.tsinghua.edu.cn/anaconda/cloud/bioconda
perl-constant             1.33            pl5321hdfd78af_2    https://mirrors.tuna.tsinghua.edu.cn/anaconda/cloud/bioconda
perl-data-dumper          2.183           pl5321hec16e2b_1    https://mirrors.tuna.tsinghua.edu.cn/anaconda/cloud/bioconda
perl-db-file              1.855           pl5321h779adbc_1    https://mirrors.tuna.tsinghua.edu.cn/anaconda/cloud/bioconda
perl-encode               3.19            pl5321hec16e2b_1    https://mirrors.tuna.tsinghua.edu.cn/anaconda/cloud/bioconda
perl-exporter             5.72            pl5321hdfd78af_2    https://mirrors.tuna.tsinghua.edu.cn/anaconda/cloud/bioconda
perl-exporter-tiny        1.002002        pl5321hdfd78af_0    https://mirrors.tuna.tsinghua.edu.cn/anaconda/cloud/bioconda
perl-extutils-makemaker   7.70            pl5321hd8ed1ab_0    https://mirrors.tuna.tsinghua.edu.cn/anaconda/cloud/conda-forge
perl-ffi-checklib         0.28            pl5321hdfd78af_0    https://mirrors.tuna.tsinghua.edu.cn/anaconda/cloud/bioconda
perl-file-chdir           0.1010          pl5321hdfd78af_3    https://mirrors.tuna.tsinghua.edu.cn/anaconda/cloud/bioconda
perl-file-path            2.18            pl5321hd8ed1ab_0    https://mirrors.tuna.tsinghua.edu.cn/anaconda/cloud/conda-forge
perl-file-temp            0.2304          pl5321hd8ed1ab_0    https://mirrors.tuna.tsinghua.edu.cn/anaconda/cloud/conda-forge
perl-file-util            4.201720        pl5321hdfd78af_0    https://mirrors.tuna.tsinghua.edu.cn/anaconda/cloud/bioconda
perl-file-which           1.24            pl5321hd8ed1ab_0    https://mirrors.tuna.tsinghua.edu.cn/anaconda/cloud/conda-forge
perl-importer             0.026           pl5321hdfd78af_0    https://mirrors.tuna.tsinghua.edu.cn/anaconda/cloud/bioconda
perl-io-compress          2.201           pl5321hdbdd923_2    https://mirrors.tuna.tsinghua.edu.cn/anaconda/cloud/bioconda
perl-io-gzip              0.20            pl5321h7132678_4    https://mirrors.tuna.tsinghua.edu.cn/anaconda/cloud/bioconda
perl-io-zlib              1.14            pl5321hdfd78af_0    https://mirrors.tuna.tsinghua.edu.cn/anaconda/cloud/bioconda
perl-json                 4.10            pl5321hdfd78af_0    https://mirrors.tuna.tsinghua.edu.cn/anaconda/cloud/bioconda
perl-json-xs              2.34            pl5321h4ac6f70_6    https://mirrors.tuna.tsinghua.edu.cn/anaconda/cloud/bioconda
perl-lib                  0.63            pl5321hdfd78af_2    https://mirrors.tuna.tsinghua.edu.cn/anaconda/cloud/bioconda
perl-list-moreutils       0.430           pl5321hdfd78af_0    https://mirrors.tuna.tsinghua.edu.cn/anaconda/cloud/bioconda
perl-list-moreutils-xs    0.430           pl5321h031d066_2    https://mirrors.tuna.tsinghua.edu.cn/anaconda/cloud/bioconda
perl-mime-base64          3.16            pl5321hec16e2b_2    https://mirrors.tuna.tsinghua.edu.cn/anaconda/cloud/bioconda
perl-parent               0.236           pl5321hdfd78af_2    https://mirrors.tuna.tsinghua.edu.cn/anaconda/cloud/bioconda
perl-path-tiny            0.122           pl5321hdfd78af_0    https://mirrors.tuna.tsinghua.edu.cn/anaconda/cloud/bioconda
perl-pathtools            3.75            pl5321hec16e2b_3    https://mirrors.tuna.tsinghua.edu.cn/anaconda/cloud/bioconda
perl-scalar-list-utils    1.62            pl5321hec16e2b_1    https://mirrors.tuna.tsinghua.edu.cn/anaconda/cloud/bioconda
perl-scope-guard          0.21            pl5321hdfd78af_3    https://mirrors.tuna.tsinghua.edu.cn/anaconda/cloud/bioconda
perl-set-intervaltree     0.12            pl5321hdbdd923_3    https://mirrors.tuna.tsinghua.edu.cn/anaconda/cloud/bioconda
perl-sub-info             0.002           pl5321hdfd78af_1    https://mirrors.tuna.tsinghua.edu.cn/anaconda/cloud/bioconda
perl-term-table           0.016           pl5321hdfd78af_0    https://mirrors.tuna.tsinghua.edu.cn/anaconda/cloud/bioconda
perl-test2-suite          0.000145        pl5321hdfd78af_0    https://mirrors.tuna.tsinghua.edu.cn/anaconda/cloud/bioconda
perl-types-serialiser     1.01            pl5321hdfd78af_0    https://mirrors.tuna.tsinghua.edu.cn/anaconda/cloud/bioconda
perl-uri                  5.12            pl5321hdfd78af_0    https://mirrors.tuna.tsinghua.edu.cn/anaconda/cloud/bioconda
perl-xml-libxml           2.0207          pl5321h661654b_0    https://mirrors.tuna.tsinghua.edu.cn/anaconda/cloud/bioconda
perl-xml-namespacesupport 1.12            pl5321hdfd78af_1    https://mirrors.tuna.tsinghua.edu.cn/anaconda/cloud/bioconda
perl-xml-sax              1.02            pl5321hdfd78af_1    https://mirrors.tuna.tsinghua.edu.cn/anaconda/cloud/bioconda
perl-xml-sax-base         1.09            pl5321hdfd78af_1    https://mirrors.tuna.tsinghua.edu.cn/anaconda/cloud/bioconda
picard                    2.21.4                        0    https://mirrors.tuna.tsinghua.edu.cn/anaconda/cloud/bioconda
pigz                      2.4                  h84994c4_0    anaconda
pip                       20.2.2                   py36_0    anaconda
pixman                    0.38.0            h516909a_1003    https://mirrors.tuna.tsinghua.edu.cn/anaconda/cloud/conda-forge
pkg-config                0.29.2            h36c2ea0_1008    https://mirrors.tuna.tsinghua.edu.cn/anaconda/cloud/conda-forge
ply                       3.11                       py_1    https://mirrors.tuna.tsinghua.edu.cn/anaconda/cloud/conda-forge
prettytable               2.5.0              pyhd8ed1ab_0    https://mirrors.tuna.tsinghua.edu.cn/anaconda/cloud/conda-forge
progressbar33             2.4                        py_0    https://mirrors.bfsu.edu.cn./anaconda/cloud/conda-forge
protobuf                  3.18.0           py36hc4f0c31_0    https://mirrors.tuna.tsinghua.edu.cn/anaconda/cloud/conda-forge
psutil                    5.8.0            py36h8f6f2f9_1    https://mirrors.tuna.tsinghua.edu.cn/anaconda/cloud/conda-forge
pthread-stubs             0.4               h36c2ea0_1001    https://mirrors.tuna.tsinghua.edu.cn/anaconda/cloud/conda-forge
pyasn1                    0.5.1              pyhd8ed1ab_0    https://mirrors.tuna.tsinghua.edu.cn/anaconda/cloud/conda-forge
pyasn1-modules            0.3.0              pyhd8ed1ab_0    https://mirrors.tuna.tsinghua.edu.cn/anaconda/cloud/conda-forge
pybigwig                  0.3.17           py36hc013797_0    https://mirrors.tuna.tsinghua.edu.cn/anaconda/cloud/bioconda
pycparser                 2.21               pyhd8ed1ab_0    https://mirrors.tuna.tsinghua.edu.cn/anaconda/cloud/conda-forge
pyensembl                 2.1.0              pyh7cba7a3_0    https://mirrors.bfsu.edu.cn/anaconda/cloud/bioconda
pygments                  2.14.0             pyhd8ed1ab_0    https://mirrors.tuna.tsinghua.edu.cn/anaconda/cloud/conda-forge
pygraphviz                1.3.1                    py36_0    https://mirrors.tuna.tsinghua.edu.cn/anaconda/cloud/bioconda
pyjwt                     2.8.0              pyhd8ed1ab_0    https://mirrors.bfsu.edu.cn./anaconda/cloud/conda-forge
pylint                    2.8.3              pyhd8ed1ab_0    https://mirrors.bfsu.edu.cn./anaconda/cloud/conda-forge
pynacl                    1.4.0            py36h8f6f2f9_2    https://mirrors.tuna.tsinghua.edu.cn/anaconda/cloud/conda-forge
pyopenssl                 22.0.0             pyhd8ed1ab_1    https://mirrors.tuna.tsinghua.edu.cn/anaconda/cloud/conda-forge
pyparsing                 3.1.1              pyhd8ed1ab_0    https://mirrors.tuna.tsinghua.edu.cn/anaconda/cloud/conda-forge
pyrsistent                0.17.3           py36h8f6f2f9_2    https://mirrors.tuna.tsinghua.edu.cn/anaconda/cloud/conda-forge
pysam                     0.8.3            py36h84994c4_6    https://mirrors.tuna.tsinghua.edu.cn/anaconda/cloud/bioconda
pysftp                    0.2.9                    py36_0    https://mirrors.tuna.tsinghua.edu.cn/anaconda/cloud/bioconda
pysocks                   1.7.1            py36h5fab9bb_3    https://mirrors.tuna.tsinghua.edu.cn/anaconda/cloud/conda-forge
python                    3.6.10               h0371630_0    anaconda
python-dateutil           2.8.2              pyhd8ed1ab_0    https://mirrors.tuna.tsinghua.edu.cn/anaconda/cloud/conda-forge
python-irodsclient        1.1.9              pyhd8ed1ab_0    https://mirrors.tuna.tsinghua.edu.cn/anaconda/cloud/conda-forge
python_abi                3.6                     2_cp36m    https://mirrors.tuna.tsinghua.edu.cn/anaconda/cloud/conda-forge
pytz                      2023.3.post1       pyhd8ed1ab_0    https://mirrors.tuna.tsinghua.edu.cn/anaconda/cloud/conda-forge
pyu2f                     0.1.5              pyhd8ed1ab_0    https://mirrors.tuna.tsinghua.edu.cn/anaconda/cloud/conda-forge
pyvcf3                    1.0.3              pyhdfd78af_0    https://mirrors.bfsu.edu.cn/anaconda/cloud/bioconda
pyyaml                    5.4.1            py36h8f6f2f9_1    https://mirrors.tuna.tsinghua.edu.cn/anaconda/cloud/conda-forge
r-base                    3.4.3                h9bb98a2_5    defaults
ratelimiter               1.2.0           pyhd8ed1ab_1003    https://mirrors.tuna.tsinghua.edu.cn/anaconda/cloud/conda-forge
readline                  7.0               hf8c457e_1001    https://mirrors.tuna.tsinghua.edu.cn/anaconda/cloud/conda-forge
requests                  2.27.1             pyhd3eb1b0_0    anaconda
requests-oauthlib         1.3.1              pyhd8ed1ab_0    https://mirrors.bfsu.edu.cn./anaconda/cloud/conda-forge
rsa                       3.1.4                    py36_0    https://mirrors.tuna.tsinghua.edu.cn/anaconda/cloud/bioconda
s3transfer                0.5.2              pyhd8ed1ab_0    https://mirrors.tuna.tsinghua.edu.cn/anaconda/cloud/conda-forge
salmon                    0.13.1               h86b0361_0    https://mirrors.tuna.tsinghua.edu.cn/anaconda/cloud/bioconda
sambamba                  0.6.6                         2    https://mirrors.tuna.tsinghua.edu.cn/anaconda/cloud/bioconda
samtools                  1.9                 h10a08f8_12    https://mirrors.tuna.tsinghua.edu.cn/anaconda/cloud/bioconda
scikit-learn              0.24.0           py36he4fde30_0    https://mirrors.bfsu.edu.cn./anaconda/cloud/conda-forge
scipy                     1.4.1                    pypi_0    pypi
sercol                    0.1.4              pyh7cba7a3_0    https://mirrors.bfsu.edu.cn/anaconda/cloud/bioconda
serializable              0.2.1              pyhd8ed1ab_0    https://mirrors.bfsu.edu.cn./anaconda/cloud/conda-forge
setuptools                58.0.4           py36h5fab9bb_2    https://mirrors.tuna.tsinghua.edu.cn/anaconda/cloud/conda-forge
simplejson                3.8.1                    py36_0    https://mirrors.tuna.tsinghua.edu.cn/anaconda/cloud/bioconda
six                       1.16.0             pyh6c4a22f_0    https://mirrors.tuna.tsinghua.edu.cn/anaconda/cloud/conda-forge
smmap                     3.0.5              pyh44b312d_0    https://mirrors.tuna.tsinghua.edu.cn/anaconda/cloud/conda-forge
snakemake                 5.5.4                         2    https://mirrors.tuna.tsinghua.edu.cn/anaconda/cloud/bioconda
snakemake-minimal         5.5.4                      py_2    https://mirrors.tuna.tsinghua.edu.cn/anaconda/cloud/bioconda
spectra                   0.0.11                     py_1    https://mirrors.tuna.tsinghua.edu.cn/anaconda/cloud/conda-forge
sqlite                    3.31.1               h7b6447c_0    anaconda
star                      2.6.1d                        0    https://mirrors.tuna.tsinghua.edu.cn/anaconda/cloud/bioconda
star-fusion               1.5.0                         0    https://mirrors.tuna.tsinghua.edu.cn/anaconda/cloud/bioconda
stone                     3.3.1              pyhd8ed1ab_0    https://mirrors.tuna.tsinghua.edu.cn/anaconda/cloud/conda-forge
tbb                       2020.2               h4bd325d_4    https://mirrors.tuna.tsinghua.edu.cn/anaconda/cloud/conda-forge
tensorboard               2.2.2                    pypi_0    pypi
tensorboard-data-server   0.6.0            py36hc39840e_0    https://mirrors.bfsu.edu.cn./anaconda/cloud/conda-forge
tensorboard-plugin-wit    1.8.1              pyhd8ed1ab_0    https://mirrors.bfsu.edu.cn./anaconda/cloud/conda-forge
tensorflow                2.2.0           mkl_py36h5a57954_0    https://mirrors.bfsu.edu.cn/anaconda/pkgs/main
tensorflow-base           2.2.0           mkl_py36hd506778_0    https://mirrors.bfsu.edu.cn/anaconda/pkgs/main
tensorflow-estimator      2.2.0                    pypi_0    pypi
termcolor                 1.1.0              pyhd8ed1ab_3    https://mirrors.bfsu.edu.cn./anaconda/cloud/conda-forge
threadpoolctl             3.1.0              pyh8a188c0_0    https://mirrors.bfsu.edu.cn./anaconda/cloud/conda-forge
tidepy                    1.3.6                    pypi_0    pypi
tinytimer                 0.0.0                      py_0    https://mirrors.bfsu.edu.cn./anaconda/cloud/conda-forge
tk                        8.6.13          noxft_h4845f30_101    https://mirrors.tuna.tsinghua.edu.cn/anaconda/cloud/conda-forge
tktable                   2.10                 h0c5db8f_5    https://mirrors.tuna.tsinghua.edu.cn/anaconda/cloud/conda-forge
toml                      0.10.2             pyhd8ed1ab_0    https://mirrors.bfsu.edu.cn./anaconda/cloud/conda-forge
tornado                   6.1              py36h8f6f2f9_1    https://mirrors.tuna.tsinghua.edu.cn/anaconda/cloud/conda-forge
tqdm                      4.7.2                    py36_0    https://mirrors.bfsu.edu.cn/anaconda/cloud/bioconda
trust4                    1.0.5.1              h2e03b76_0    https://mirrors.tuna.tsinghua.edu.cn/anaconda/cloud/bioconda
typechecks                0.1.0                      py_0    https://mirrors.bfsu.edu.cn./anaconda/cloud/conda-forge
typed-ast                 1.4.3            py36h8f6f2f9_0    https://mirrors.bfsu.edu.cn./anaconda/cloud/conda-forge
typing-extensions         4.1.1                hd8ed1ab_0    https://mirrors.tuna.tsinghua.edu.cn/anaconda/cloud/conda-forge
typing_extensions         4.1.1              pyha770c72_0    https://mirrors.tuna.tsinghua.edu.cn/anaconda/cloud/conda-forge
urllib3                   1.26.15            pyhd8ed1ab_0    https://mirrors.tuna.tsinghua.edu.cn/anaconda/cloud/conda-forge
varcode                   1.1.0              pyh7cba7a3_0    https://mirrors.bfsu.edu.cn/anaconda/cloud/bioconda
wcwidth                   0.2.10             pyhd8ed1ab_0    https://mirrors.tuna.tsinghua.edu.cn/anaconda/cloud/conda-forge
werkzeug                  2.0.2              pyhd8ed1ab_0    https://mirrors.bfsu.edu.cn./anaconda/cloud/conda-forge
wget                      1.20.3               ha56f1ee_1    https://mirrors.tuna.tsinghua.edu.cn/anaconda/cloud/conda-forge
wheel                     0.37.1             pyhd8ed1ab_0    https://mirrors.tuna.tsinghua.edu.cn/anaconda/cloud/conda-forge
wrapt                     1.13.1           py36h8f6f2f9_0    https://mirrors.tuna.tsinghua.edu.cn/anaconda/cloud/conda-forge
xorg-kbproto              1.0.7             h7f98852_1002    https://mirrors.tuna.tsinghua.edu.cn/anaconda/cloud/conda-forge
xorg-libice               1.1.1                hd590300_0    https://mirrors.tuna.tsinghua.edu.cn/anaconda/cloud/conda-forge
xorg-libsm                1.2.4                h7391055_0    https://mirrors.tuna.tsinghua.edu.cn/anaconda/cloud/conda-forge
xorg-libx11               1.8.7                h8ee46fc_0    https://mirrors.tuna.tsinghua.edu.cn/anaconda/cloud/conda-forge
xorg-libxau               1.0.11               hd590300_0    https://mirrors.tuna.tsinghua.edu.cn/anaconda/cloud/conda-forge
xorg-libxdmcp             1.1.3                h7f98852_0    https://mirrors.tuna.tsinghua.edu.cn/anaconda/cloud/conda-forge
xorg-libxext              1.3.4                h0b41bf4_2    https://mirrors.tuna.tsinghua.edu.cn/anaconda/cloud/conda-forge
xorg-libxrender           0.9.11               hd590300_0    https://mirrors.tuna.tsinghua.edu.cn/anaconda/cloud/conda-forge
xorg-libxt                1.3.0                hd590300_1    https://mirrors.tuna.tsinghua.edu.cn/anaconda/cloud/conda-forge
xorg-renderproto          0.11.1            h7f98852_1002    https://mirrors.tuna.tsinghua.edu.cn/anaconda/cloud/conda-forge
xorg-xextproto            7.3.0             h0b41bf4_1003    https://mirrors.tuna.tsinghua.edu.cn/anaconda/cloud/conda-forge
xorg-xproto               7.0.31            h7f98852_1007    https://mirrors.tuna.tsinghua.edu.cn/anaconda/cloud/conda-forge
xz                        5.2.6                h166bdaf_0    https://mirrors.tuna.tsinghua.edu.cn/anaconda/cloud/conda-forge
yaml                      0.2.5                h7f98852_2    https://mirrors.tuna.tsinghua.edu.cn/anaconda/cloud/conda-forge
yarl                      1.6.3            py36h8f6f2f9_2    https://mirrors.tuna.tsinghua.edu.cn/anaconda/cloud/conda-forge
zipp                      3.6.0              pyhd8ed1ab_0    https://mirrors.tuna.tsinghua.edu.cn/anaconda/cloud/conda-forge
zlib                      1.2.13               hd590300_5    https://mirrors.tuna.tsinghua.edu.cn/anaconda/cloud/conda-forge
zstd                      1.5.5                hfc55251_0    https://mirrors.tuna.tsinghua.edu.cn/anaconda/cloud/conda-forge

pip list
Package                       Version
----------------------------- ------------
absl-py                       1.4.0
aioeasywebdav                 2.4.0
aiohttp                       3.7.4.post0
appdirs                       1.4.4
astor                         0.8.1
astroid                       2.5.6
astunparse                    1.6.3
async-timeout                 3.0.1
attrs                         22.2.0
backports.functools-lru-cache 2.0.0
bcrypt                        3.2.0
biopython                     1.76
blinker                       1.5
boto3                         1.21.32
botocore                      1.24.32
brotlipy                      0.7.0
cachetools                    4.2.4
certifi                       2021.5.30
cffi                          1.14.6
chardet                       4.0.0
charset-normalizer            2.0.12
click                         8.0.1
colorama                      0.4.5
coloredlogs                   15.0.1
colormath                     3.0.0
ConfigArgParse                1.7
cryptography                  35.0.0
cycler                        0.11.0
datacache                     1.1.5
dataclasses                   0.8
datrie                        0.8.2
decorator                     4.4.2
defusedxml                    0.7.1
docutils                      0.17.1
dropbox                       11.36.2
filechunkio                   1.6
ftputil                       3.2
future                        0.18.2
gast                          0.3.3
gitdb                         4.0.10
GitPython                     3.1.18
google-api-core               2.8.0
google-auth                   1.35.0
google-auth-oauthlib          0.4.6
google-cloud-core             2.3.1
google-cloud-storage          2.10.0
google-crc32c                 1.1.2
google-pasta                  0.2.0
google-resumable-media        2.3.3
googleapis-common-protos      1.53.0
grpcio                        1.38.1
gtfparse                      1.2.1
h5py                          2.10.0
humanfriendly                 10.0
idna                          3.6
idna-ssl                      1.1.0
importlib-metadata            4.8.1
isort                         5.10.1
Jinja2                        3.0.3
jmespath                      0.10.0
joblib                        1.0.1
jsonschema                    4.1.2
Keras                         2.4.3
Keras-Preprocessing           1.1.2
kiwisolver                    1.3.1
lazy-object-proxy             1.6.0
lzstring                      1.0.4
Markdown                      3.3.7
MarkupSafe                    2.0.1
matplotlib                    3.1.3
mccabe                        0.6.1
memoized-property             1.0.3
mhcflurry                     2.0.1
mhcnames                      0.4.8
mhcnuggets                    2.4.1
mhctools                      1.8.1
mkl-fft                       1.1.0
mkl-random                    1.1.0
mkl-service                   2.3.0
mock                          5.1.0
multidict                     5.2.0
multiqc                       1.9
networkx                      2.5.1
np-utils                      0.5.12.1
numpy                         1.19.1
oauthlib                      3.2.2
opt-einsum                    3.3.0
pandas                        1.0.5
paramiko                      2.12.0
pip                           20.2.2
ply                           3.11
prettytable                   2.5.0
progressbar33                 2.4
protobuf                      3.18.0
psutil                        5.8.0
pyasn1                        0.5.1
pyasn1-modules                0.3.0
pyBigWig                      0.3.17
pycparser                     2.21
pyensembl                     2.1.0
Pygments                      2.14.0
pygraphviz                    1.3.1
PyJWT                         2.8.0
pylint                        2.8.3
PyNaCl                        1.4.0
pyOpenSSL                     22.0.0
pyparsing                     3.1.1
pyrsistent                    0.17.3
pysam                         0.8.3
pysftp                        0.2.9
PySocks                       1.7.1
python-dateutil               2.8.2
python-irodsclient            1.1.9
pytz                          2023.3.post1
pyu2f                         0.1.5
PyVCF3                        1.0.3
PyYAML                        5.4.1
ratelimiter                   1.2.0
requests                      2.27.1
requests-oauthlib             1.3.1
rsa                           3.1.4
s3transfer                    0.5.2
scikit-learn                  0.24.0
scipy                         1.4.1
sercol                        0.1.4
serializable                  0.2.1
setuptools                    58.0.4
simplejson                    3.8.1
six                           1.16.0
smmap                         3.0.5
snakemake                     5.5.4
spectra                       0.0.11
stone                         3.3.1
tensorboard                   2.2.2
tensorboard-data-server       0.6.0
tensorboard-plugin-wit        1.8.1
tensorflow                    2.2.0
tensorflow-estimator          2.2.0
termcolor                     1.1.0
threadpoolctl                 3.1.0
tidepy                        1.3.6
tinytimer                     0.0.0
toml                          0.10.2
tornado                       6.1
tqdm                          4.7.2
typechecks                    0.1.0
typed-ast                     1.4.3
typing-extensions             4.1.1
urllib3                       1.26.15
varcode                       1.1.0
wcwidth                       0.2.10
Werkzeug                      2.0.2
wheel                         0.37.1
wrapt                         1.13.1
yarl                          1.6.3
zipp                          3.6.0

By the way, this environment is very complex. I wonder if the author is willing to develop a docker version? @Lindky

sunqiangzai commented 3 months ago

stat_perl_r works for me, here are the environment info. Anyway, the docker version of RIMA is helpful. 

# packages in environment at /home/sutai/miniconda3/envs/stat_perl_r:
#
# Name                    Version                   Build  Channel
_libgcc_mutex             0.1                        main    defaults
_openmp_mutex             5.1                       1_gnu    defaults
_r-mutex                  1.0.0               anacondar_1    r
binutils_impl_linux-64    2.33.1               he6710b0_7    defaults
binutils_linux-64         2.33.1              h9595d00_15    defaults
bioconductor-annotate     1.64.0                    r36_0    bioconda
bioconductor-annotationdbi 1.48.0                    r36_0    bioconda
bioconductor-annotationfilter 1.10.0                    r36_0    bioconda
bioconductor-biobase      2.46.0            r36h516909a_0    bioconda
bioconductor-biocfilecache 1.10.0                    r36_0    bioconda
bioconductor-biocgenerics 0.32.0                    r36_0    bioconda
bioconductor-biocparallel 1.20.0            r36he1b5a44_0    bioconda
bioconductor-biocstyle    2.14.0                    r36_0    bioconda
bioconductor-biomart      2.42.0                    r36_0    bioconda
bioconductor-biostrings   2.54.0            r36h516909a_0    bioconda
bioconductor-biovizbase   1.34.0            r36h516909a_0    bioconda
bioconductor-bsgenome     1.54.0                    r36_0    bioconda
bioconductor-chimeraviz   1.12.0                    r36_0    bioconda
bioconductor-clusterprofiler 3.14.0                    r36_0    bioconda
bioconductor-complexheatmap 2.2.0                     r36_0    bioconda
bioconductor-delayedarray 0.12.0            r36h516909a_0    bioconda
bioconductor-deseq2       1.26.0            r36he1b5a44_0    bioconda
bioconductor-do.db        2.9                       r36_7    bioconda
bioconductor-dose         3.12.0                    r36_0    bioconda
bioconductor-enrichplot   1.6.0                     r36_0    bioconda
bioconductor-ensembldb    2.10.0                    r36_0    bioconda
bioconductor-fgsea        1.12.0            r36he1b5a44_0    bioconda
bioconductor-genefilter   1.68.0            r36hc99cbb1_0    bioconda
bioconductor-geneplotter  1.64.0                    r36_0    bioconda
bioconductor-genomeinfodb 1.22.0                    r36_0    bioconda
bioconductor-genomeinfodbdata 1.2.2                     r36_0    bioconda
bioconductor-genomicalignments 1.22.0            r36h516909a_0    bioconda
bioconductor-genomicfeatures 1.38.0                    r36_0    bioconda
bioconductor-genomicranges 1.38.0            r36h516909a_0    bioconda
bioconductor-ggtree       2.0.0                     r36_0    bioconda
bioconductor-go.db        3.10.0                    r36_0    bioconda
bioconductor-gosemsim     2.12.0            r36he1b5a44_0    bioconda
bioconductor-graph        1.64.0            r36h516909a_0    bioconda
bioconductor-gseabase     1.48.0                    r36_0    bioconda
bioconductor-gsva         1.34.0            r36h516909a_0    bioconda
bioconductor-gviz         1.30.0                    r36_0    bioconda
bioconductor-impute       1.60.0            r36h6e990d7_0    bioconda
bioconductor-iranges      2.20.0            r36h516909a_0    bioconda
bioconductor-limma        3.42.0            r36h516909a_0    bioconda
bioconductor-maftools     2.2.0                     r36_0    bioconda
bioconductor-msa          1.18.0            r36he1b5a44_0    bioconda
bioconductor-org.hs.eg.db 3.10.0                    r36_0    bioconda
bioconductor-org.mm.eg.db 3.10.0                    r36_0    bioconda
bioconductor-preprocesscore 1.48.0            r36h516909a_0    bioconda
bioconductor-protgenerics 1.18.0                    r36_0    bioconda
bioconductor-qvalue       2.18.0                    r36_1    bioconda
bioconductor-rgraphviz    2.30.0            r36he1b5a44_0    bioconda
bioconductor-rhtslib      1.18.0            r36hdb70ac9_1    bioconda
bioconductor-rsamtools    2.2.0             r36he1b5a44_0    bioconda
bioconductor-rtracklayer  1.46.0            r36h516909a_0    bioconda
bioconductor-s4vectors    0.24.0            r36h516909a_0    bioconda
bioconductor-summarizedexperiment 1.16.0                    r36_0    bioconda
bioconductor-sva          3.34.0            r36h516909a_0    bioconda
bioconductor-treeio       1.10.0                    r36_0    bioconda
bioconductor-tximport     1.14.0                    r36_0    bioconda
bioconductor-variantannotation 1.32.0            r36h516909a_0    bioconda
bioconductor-xvector      0.26.0            r36h516909a_0    bioconda
bioconductor-zlibbioc     1.32.0            r36h516909a_0    bioconda
bowtie2                   2.4.2            py39hc9c6fcd_2    bioconda
bwidget                   1.9.16               h9eba36c_0    defaults
bzip2                     1.0.8                h5eee18b_6    defaults
ca-certificates           2024.3.11            h06a4308_0    defaults
cairo                     1.16.0               hb05425b_5    defaults
curl                      7.69.1               hbc83047_0    defaults
expat                     2.6.2                h6a678d5_0    defaults
fontconfig                2.14.1               h52c9d5c_1    defaults
freetype                  2.12.1               h4a9f257_0    defaults
fribidi                   1.0.10               h7b6447c_0    defaults
gcc_impl_linux-64         7.3.0                habb00fd_1    defaults
gcc_linux-64              7.3.0               h553295d_15    defaults
gdbm                      1.18                 hd4cb3f1_4    defaults
gfortran_impl_linux-64    7.3.0                hdf63c60_1    defaults
gfortran_linux-64         7.3.0               h553295d_15    defaults
glib                      2.78.4               h6a678d5_0    defaults
glib-tools                2.78.4               h6a678d5_0    defaults
graphite2                 1.3.14               h295c915_1    defaults
gsl                       2.4                  h14c3975_4    defaults
gxx_impl_linux-64         7.3.0                hdf63c60_1    defaults
gxx_linux-64              7.3.0               h553295d_15    defaults
harfbuzz                  4.3.0                hf52aaf7_1    defaults
icu                       58.2                 he6710b0_3    defaults
jpeg                      9e                   h5eee18b_1    defaults
krb5                      1.17.1               h173b8e3_0    defaults
ld_impl_linux-64          2.33.1               h53a641e_7    defaults
lerc                      3.0                  h295c915_0    defaults
libblas                   3.9.0           13_linux64_openblas    conda-forge
libcurl                   7.69.1               h20c2e04_0    defaults
libdeflate                1.17                 h5eee18b_1    defaults
libedit                   3.1.20230828         h5eee18b_0    defaults
libffi                    3.4.4                h6a678d5_1    defaults
libgcc-ng                 11.2.0               h1234567_1    defaults
libgfortran-ng            7.5.0               ha8ba4b0_17    defaults
libgfortran4              7.5.0               ha8ba4b0_17    defaults
libglib                   2.78.4               hdc74915_0    defaults
libgomp                   11.2.0               h1234567_1    defaults
libiconv                  1.16                 h5eee18b_3    defaults
liblapack                 3.9.0           13_linux64_openblas    conda-forge
libopenblas               0.3.18               hf726d26_0    defaults
libpng                    1.6.39               h5eee18b_0    defaults
libssh2                   1.10.0               h37d81fd_2    defaults
libstdcxx-ng              11.2.0               h1234567_1    defaults
libtiff                   4.5.1                h6a678d5_0    defaults
libuuid                   1.41.5               h5eee18b_0    defaults
libwebp-base              1.3.2                h5eee18b_0    defaults
libxcb                    1.15                 h7f8727e_0    defaults
libxml2                   2.9.14               h74e7548_0    defaults
lz4-c                     1.9.4                h6a678d5_1    defaults
make                      4.2.1                h1bed415_1    defaults
ncurses                   6.4                  h6a678d5_0    defaults
openssl                   1.1.1w               h7f8727e_0    defaults
pango                     1.50.7               h05da053_0    defaults
pcre                      8.45                 h295c915_0    defaults
pcre2                     10.42                hebb0a14_1    defaults
perl                      5.34.0               h5eee18b_2    defaults
pip                       24.0             py39h06a4308_0    defaults
pixman                    0.40.0               h7f8727e_1    defaults
python                    3.9.16               h7a1cb2a_2    defaults
python_abi                3.9                      2_cp39    conda-forge
r                         3.6.0                     r36_0    r
r-acepack                 1.4.1             r36ha65eedd_0    r
r-ade4                    1.7_13            r36h96ca727_0    r
r-ape                     5.3               r36h29659fb_0    r
r-argumentcheck           0.10.2            r36h6115d3f_0    r
r-askpass                 1.0               r36h14c3975_0    r
r-assertthat              0.2.1             r36h6115d3f_0    r
r-backports               1.1.4             r36h96ca727_0    r
r-base                    3.6.1                haffb61f_2    r
r-base64enc               0.1_3             r36h96ca727_4    r
r-beeswarm                0.2.3             r36h6115d3f_0    r
r-bh                      1.69.0_1          r36h6115d3f_0    r
r-biocmanager             1.30.4            r36h6115d3f_0    r
r-bit                     1.1_14            r36h96ca727_0    r
r-bit64                   0.9_7             r36h96ca727_0    r
r-bitops                  1.0_6             r36h96ca727_4    r
r-blob                    1.1.1             r36h6115d3f_0    r
r-bookdown                0.13              r36h6115d3f_0    r
r-boot                    1.3_20            r36h6115d3f_0    r
r-brew                    1.0_6             r36h6115d3f_4    r
r-broom                   0.5.2             r36h6115d3f_0    r
r-callr                   3.2.0             r36h6115d3f_0    r
r-cellranger              1.1.0             r36h6115d3f_0    r
r-checkmate               1.9.1             r36h96ca727_0    r
r-circlize                0.4.12            r36hc72bb7e_0    conda-forge
r-class                   7.3_15            r36h96ca727_0    r
r-cli                     1.1.0             r36h6115d3f_0    r
r-clipr                   0.6.0             r36h6115d3f_0    r
r-clue                    0.3_57            r36h96ca727_0    r
r-cluster                 2.0.8             r36ha65eedd_0    r
r-coda                    0.19_2            r36h6115d3f_0    r
r-codetools               0.2_16            r36h6115d3f_0    r
r-colorspace              1.4_1             r36h96ca727_0    r
r-commonmark              1.7               r36h96ca727_0    r
r-corrplot                0.84              r36h6115d3f_0    r
r-cowplot                 1.1.1             r36hc72bb7e_0    conda-forge
r-crayon                  1.3.4             r36h6115d3f_0    r
r-crosstalk               1.0.0             r36h6115d3f_0    r
r-curl                    3.3               r36h96ca727_0    r
r-data.table              1.12.2            r36h96ca727_0    r
r-data.tree               1.0.0                     r36_0    conda-forge
r-dbi                     1.0.0             r36h6115d3f_0    r
r-dbplyr                  1.4.0             r36h6115d3f_0    r
r-dendextend              1.15.1            r36hc72bb7e_0    conda-forge
r-deoptimr                1.0_8             r36h6115d3f_0    r
r-desc                    1.2.0             r36h6115d3f_0    r
r-diagrammer              1.0.1             r36h6115d3f_0    r
r-dichromat               2.0_0             r36h6115d3f_4    r
r-digest                  0.6.18            r36h96ca727_0    r
r-doparallel              1.0.14            r36h6115d3f_0    r
r-downloader              0.4               r36h6115d3f_0    r
r-dplyr                   0.8.0.1           r36h29659fb_0    r
r-dt                      0.5               r36h6115d3f_0    r
r-dynamictreecut          1.63_1            r36h6115d3f_0    r
r-e1071                   1.7_1             r36h29659fb_0    r
r-ellipsis                0.1.0             r36h96ca727_0    r
r-epic                    1.1                       r36_1    bioconda
r-europepmc               0.4               r36h6115d3f_0    conda-forge
r-evaluate                0.13              r36h6115d3f_0    r
r-fansi                   0.4.0             r36h96ca727_0    r
r-farver                  2.1.0             r36h03ef668_0    conda-forge
r-fastcluster             1.1.25            r36h29659fb_0    r
r-fastmatch               1.1_0             r36h96ca727_0    r
r-fit.models              0.5_14            r36h6115d3f_0    r
r-forcats                 0.4.0             r36h6115d3f_0    r
r-foreach                 1.4.4             r36h6115d3f_0    r
r-foreign                 0.8_71            r36h96ca727_0    r
r-formatr                 1.6               r36h6115d3f_0    r
r-formula                 1.2_3             r36h6115d3f_0    r
r-fs                      1.2.7             r36h29659fb_0    r
r-futile.logger           1.4.3           r36h6115d3f_1003    conda-forge
r-futile.options          1.0.1             r36h6115d3f_0    r
r-generics                0.0.2             r36h6115d3f_0    r
r-getopt                  1.20.3            r36h6115d3f_0    r
r-getoptlong              1.0.5             r36hc72bb7e_0    conda-forge
r-ggally                  2.0.0             r36h142f84f_1    conda-forge
r-ggcorrplot              0.1.3             r36h6115d3f_2    conda-forge
r-ggforce                 0.3.3             r36h03ef668_0    conda-forge
r-ggfortify               0.4.11            r36h142f84f_0    conda-forge
r-ggnewscale              0.4.5             r36hc72bb7e_0    conda-forge
r-ggplot2                 3.3.3             r36hc72bb7e_0    conda-forge
r-ggplotify               0.0.7             r36hc72bb7e_0    conda-forge
r-ggpubr                  0.2.5             r36h6115d3f_1    conda-forge
r-ggraph                  2.0.5             r36h03ef668_0    conda-forge
r-ggrepel                 0.9.1             r36h03ef668_0    conda-forge
r-ggridges                0.5.3             r36hc72bb7e_0    conda-forge
r-ggsci                   2.9             r36h6115d3f_1003    conda-forge
r-ggsignif                0.6.1             r36hc72bb7e_0    conda-forge
r-globaloptions           0.1.0             r36h6115d3f_0    r
r-glue                    1.3.1             r36h96ca727_0    r
r-graphlayouts            0.7.1             r36h1b71b39_0    conda-forge
r-gridextra               2.3               r36h6115d3f_0    r
r-gridgraphics            0.4_1             r36h6115d3f_0    r
r-gtable                  0.3.0             r36h6115d3f_0    r
r-gtools                  3.8.1             r36h96ca727_0    r
r-haven                   2.1.0             r36h29659fb_0    r
r-highr                   0.8               r36h6115d3f_0    r
r-hmisc                   4.2_0             r36ha65eedd_0    r
r-hms                     0.4.2             r36h6115d3f_0    r
r-htmltable               1.13.1            r36h6115d3f_0    r
r-htmltools               0.3.6             r36h29659fb_0    r
r-htmlwidgets             1.3               r36h6115d3f_0    r
r-httpuv                  1.5.1             r36h29659fb_0    r
r-httr                    1.4.0             r36h6115d3f_0    r
r-igraph                  1.2.4.1           r36h80f5a37_0    r
r-immunedeconv            2.0.2                     r36_0    bioconda
r-influencer              0.1.0             r36h96ca727_0    r
r-isoband                 0.2.0             r36h29659fb_0    r
r-iterators               1.0.10            r36h6115d3f_0    r
r-jsonlite                1.6               r36h96ca727_0    r
r-kernsmooth              2.23_15           r36ha65eedd_4    r
r-knitr                   1.22              r36h6115d3f_0    r
r-labeling                0.3               r36h6115d3f_4    r
r-lambda.r                1.2.3             r36h6115d3f_0    r
r-later                   0.8.0             r36h29659fb_0    r
r-lattice                 0.20_38           r36h96ca727_0    r
r-latticeextra            0.6_28            r36h6115d3f_0    r
r-lazyeval                0.2.2             r36h96ca727_0    r
r-lifecycle               1.0.0             r36hc72bb7e_0    conda-forge
r-limsolve                1.5.6             r36h31ca83e_2    conda-forge
r-locfit                  1.5_9.4           r36hcdcec82_1    conda-forge
r-lpsolve                 5.6.13            r36h96ca727_0    r
r-lubridate               1.7.4             r36h29659fb_0    r
r-magrittr                1.5               r36h6115d3f_4    r
r-markdown                0.9               r36h96ca727_0    r
r-mass                    7.3_51.3          r36h96ca727_0    r
r-matrix                  1.2_17            r36h96ca727_0    r
r-matrixstats             0.54.0            r36h96ca727_0    r
r-mcpcounter              1.1.0                     r36_0    bioconda
r-memoise                 1.1.0             r36h6115d3f_0    r
r-mgcv                    1.8_28            r36h96ca727_0    r
r-mime                    0.6               r36h96ca727_0    r
r-modelr                  0.1.4             r36h6115d3f_0    r
r-munsell                 0.5.0             r36h6115d3f_0    r
r-mvtnorm                 1.0_10            r36ha65eedd_0    r
r-network                 1.16.0            r36hcdcec82_1    conda-forge
r-nlme                    3.1_139           r36ha65eedd_0    r
r-nnet                    7.3_12            r36h96ca727_0    r
r-openssl                 1.3               r36h96ca727_0    r
r-optparse                1.6.2             r36h6115d3f_0    r
r-pcapp                   1.9_73            r36h29659fb_0    r
r-permute                 0.9_5             r36h6115d3f_0    r
r-pheatmap                1.0.12            r36h6115d3f_0    r
r-pillar                  1.3.1             r36h6115d3f_0    r
r-pkgbuild                1.0.3             r36h6115d3f_0    r
r-pkgconfig               2.0.2             r36h6115d3f_0    r
r-pkgload                 1.0.2             r36h29659fb_0    r
r-plogr                   0.2.0             r36h6115d3f_0    r
r-plyr                    1.8.4             r36h29659fb_0    r
r-png                     0.1_7             r36h96ca727_0    r
r-polyclip                1.10_0            r36h29659fb_0    r
r-polynom                 1.4_0             r36h6115d3f_0    r
r-pracma                  2.2.5             r36h6115d3f_0    r
r-praise                  1.0.0             r36h6115d3f_4    r
r-prettyunits             1.0.2             r36h6115d3f_0    r
r-processx                3.3.0             r36h96ca727_0    r
r-progress                1.2.0             r36h6115d3f_0    r
r-promises                1.0.1             r36h29659fb_0    r
r-ps                      1.3.0             r36h96ca727_0    r
r-purrr                   0.3.2             r36h96ca727_0    r
r-quadprog                1.5_5             r36ha65eedd_4    r
r-r.methodss3             1.7.1             r36h6115d3f_0    r
r-r.oo                    1.22.0            r36h6115d3f_0    r
r-r.utils                 2.8.0             r36h6115d3f_0    r
r-r6                      2.4.0             r36h6115d3f_0    r
r-rappdirs                0.3.1             r36h96ca727_0    r
r-rcircos                 1.2.1             r36h6115d3f_0    r
r-rcolorbrewer            1.1_2             r36h6115d3f_0    r
r-rcpp                    1.0.1             r36h29659fb_0    r
r-rcpparmadillo           0.9.300.2.0       r36h29659fb_0    r
r-rcppeigen               0.3.3.5.0         r36h29659fb_0    r
r-rcurl                   1.95_4.12         r36h96ca727_0    r
r-readr                   1.3.1             r36h29659fb_0    r
r-readxl                  1.3.1             r36h29659fb_0    r
r-recommended             3.6.0                     r36_0    r
r-rematch                 1.0.1             r36h6115d3f_0    r
r-reprex                  0.2.1             r36h6115d3f_0    r
r-reshape                 0.8.8             r36h6115d3f_0    r
r-reshape2                1.4.3             r36h29659fb_0    r
r-rgexf                   0.15.3            r36h96ca727_0    r
r-rjson                   0.2.20            r36h29659fb_0    r
r-rlang                   0.4.11            r36hcfec24a_0    conda-forge
r-rle                     0.9.2             r36h0eb13af_0    conda-forge
r-rmarkdown               1.12              r36h6115d3f_0    r
r-robust                  0.5_0.0           r36hc3f0d1c_2    conda-forge
r-robustbase              0.93_4            r36ha65eedd_0    r
r-rook                    1.1_1             r36h96ca727_0    r
r-roxygen2                6.1.1             r36h29659fb_0    r
r-rpart                   4.1_15            r36h96ca727_0    r
r-rprojroot               1.3_2             r36h6115d3f_0    r
r-rrcov                   1.5_5             r36hed91ed1_1    conda-forge
r-rsqlite                 2.1.1             r36h29659fb_0    r
r-rstudioapi              0.10              r36h6115d3f_0    r
r-rvcheck                 0.1.3             r36h6115d3f_0    r
r-rvest                   0.3.3             r36h6115d3f_0    r
r-scales                  1.1.1             r36h6115d3f_0    conda-forge
r-segmented               1.0_0             r36h6115d3f_0    r
r-selectr                 0.4_1             r36h6115d3f_0    r
r-seqinr                  4.2_5             r36hcfec24a_0    conda-forge
r-shape                   1.4.4             r36h6115d3f_0    r
r-shiny                   1.3.2             r36h6115d3f_0    r
r-shinythemes             1.1.2             r36h6115d3f_0    r
r-sna                     2.5               r36hcdcec82_1    conda-forge
r-snow                    0.4_3             r36h6115d3f_0    r
r-sourcetools             0.1.7             r36h29659fb_0    r
r-spatial                 7.3_11            r36h96ca727_4    r
r-statnet.common          4.4.1             r36h0eb13af_0    conda-forge
r-stringi                 1.4.3             r36h29659fb_0    r
r-stringr                 1.4.0             r36h6115d3f_0    r
r-survival                2.44_1.1          r36h96ca727_0    r
r-sys                     3.2               r36h96ca727_0    r
r-testit                  0.9               r36h6115d3f_0    r
r-testthat                2.1.1             r36h29659fb_0    r
r-tibble                  2.1.1             r36h96ca727_0    r
r-tidygraph               1.2.0             r36h0357c0b_0    conda-forge
r-tidyr                   0.8.3             r36h29659fb_0    r
r-tidyselect              0.2.5             r36h29659fb_0    r
r-tidytree                0.3.4             r36hc72bb7e_0    conda-forge
r-tidyverse               1.2.1             r36h6115d3f_0    r
r-tinytex                 0.12              r36h6115d3f_0    r
r-triebeard               0.3.0             r36h29659fb_0    r
r-tweenr                  1.0.2             r36h03ef668_0    conda-forge
r-urltools                1.7.3             r36h0357c0b_2    conda-forge
r-utf8                    1.1.4             r36h96ca727_0    r
r-vegan                   2.5_6             r36hc3f0d1c_3    conda-forge
r-viridis                 0.5.1             r36h6115d3f_0    r
r-viridislite             0.3.0             r36h6115d3f_0    r
r-visnetwork              2.0.6             r36h6115d3f_0    r
r-wgcna                   1.69              r36h0357c0b_0    bioconda
r-whisker                 0.3_2             r36h6115d3f_4    r
r-withr                   2.1.2             r36h6115d3f_0    r
r-wordcloud               2.6               r36h29659fb_0    r
r-xcell                   1.2               r36hc9558a2_2    bioconda
r-xfun                    0.6               r36h6115d3f_0    r
r-xml                     3.98_1.19         r36h96ca727_0    r
r-xml2                    1.2.0             r36h29659fb_0    r
r-xtable                  1.8_4             r36h6115d3f_0    r
r-yaml                    2.2.0             r36h96ca727_0    r
readline                  8.2                  h5eee18b_0    defaults
setuptools                69.5.1           py39h06a4308_0    defaults
sqlite                    3.45.3               h5eee18b_0    defaults
tbb                       2020.3               hfd86e86_0    defaults
tk                        8.6.14               h39e8969_0    defaults
tktable                   2.10                 h3d55465_1    defaults
tzdata                    2024a                h04d1e81_0    defaults
wheel                     0.43.0           py39h06a4308_0    defaults
xz                        5.2.10               h5eee18b_1    defaults
zlib                      1.2.13               h5eee18b_1    defaults
zstd                      1.5.5                hc292b87_0    defaults