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liulab-dfci / TRUST4

TCR and BCR assembly from RNA-seq data
MIT License
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Fields with Null values in the AIRR format output #115

Open bliu100 opened 2 years ago

bliu100 commented 2 years ago

Hi, I am trying to use the airr output files for the downstream mutation analysis. The analysis tool (Immcantation suite) can take AIRR-format files as input. The tool needs to read two columns from the AIRR files: sequence_alignment and germline_alignment. However, the values from both columns are null from TRUST4 output. I wonder if there is a way to change the setting of TRUST4 to output the sequence information for both of the columns in the AIRR report files. Thank you.

mourisl commented 2 years ago

Currently, we don't have the output information for that two fields yet. I will work on an update to include the information for these two fields in two weeks.

bliu100 commented 2 years ago

Thank you very much.