I am trying to run seGMM for the first time and I got an error at the end. I was running only four samples to test. It generates several outputs but fails to write the last file.
Could you help solve this issue?
The analysis was ok and can I use the files?
seGMM
Version 1.3.0
(C) 2021-2026 Sihan Liu
Research Institute of Rare disease / West china hospital
GNU General Public License v3
Beginning to generate features at Fri Jan 19 15:58:39 2024
Collected feature of X chromosome heterozygosity
Finish generate features of X chromosome heterozygosity at Fri Jan 19 15:58:41 2024
Collected feature of X mapping rate
Finish generate features of X mapping rate at Fri Jan 19 16:01:01 2024
Collected feature of Y mapping rate
Finish generate features of Y mapping rate at Fri Jan 19 16:01:01 2024
Collected feature of mean depth of SRY gene
Finish generate features of mean depth of SRY gene at Fri Jan 19 16:01:03 2024
Combine features into a single file
>> Running sample classification based on GMM model
Error in if (G[1] == 1) { : missing value where TRUE/FALSE needed
Calls: Mclust -> eval -> eval -> mclustBIC
Execution halted
Analysis complete for seGMM at Fri Jan 19 16:01:04 2024
Total time elapsed: 2.0m:25.00999999999999s
Hi, it seems that the problem is caused by only four specific samples. To resolve this, I would recommend merging your current dataset with relevant reference data.
Hello,
I am trying to run seGMM for the first time and I got an error at the end. I was running only four samples to test. It generates several outputs but fails to write the last file.
Could you help solve this issue?
The analysis was ok and can I use the files?
Beginning to generate features at Fri Jan 19 15:58:39 2024
>> Running sample classification based on GMM model Error in if (G[1] == 1) { : missing value where TRUE/FALSE needed Calls: Mclust -> eval -> eval -> mclustBIC Execution halted
Analysis complete for seGMM at Fri Jan 19 16:01:04 2024 Total time elapsed: 2.0m:25.00999999999999s