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liusihan / seGMM

A new tool to infer sex from massively parallel sequencing data.
MIT License
12 stars 2 forks source link

seGMM suitability for imputated genotype arrays #15

Open nickhir opened 2 months ago

nickhir commented 2 months ago

Hello,

I came across your tool/paper and found it really useful for our research. I was wondering if seGMM could also be used with imputed genotype array data? From what I understand, your focus has been primarily on TGS/WGS/WES data according to your publication. I’d be really interested to hear your opinion on its applicability to genotype array data as well, since I only have VCF files available.

Any help is much appreciated!

nickhir commented 2 months ago

I just realized that bam files are required as an input, so I guess genotyping arrays are not suitable