Trouble running main Dialogue function

livnatje / DIALOGUE

DIALOGUE is a dimensionality reduction method that uses cross-cell-type associations to identify multicellular programs (MCPs) and map the cell transcriptome as a function of its environment.

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Trouble running main Dialogue function #1

Closed amr15 closed 2 years ago

amr15 commented 3 years ago

Hello, I'm able to get the test data set to run smoothly, but have been having trouble trying to get this to run with my own data.
When moving to DIALOGUE.run(), I'm running into this error, and was wondering if you have any suggestions? I'm feeding it a list of cell type objects created using the make.cell.type function.

"[1] "#****DIALOGUE Step I: PMD ****#" Error in svd(xlist[[i]]) : a dimension is zero

Thanks! Anu

livnatje commented 3 years ago

Hi Anu!

Could you print out a summary of the (cell.type) items in the list that you're providing as input? I think the problem might be there, particularly in the original feature space X.

Thanks, Livnat

livnatje commented 2 years ago

I assume the issue was resolved, so closing this. Thanks!