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livnatje / DIALOGUE

DIALOGUE is a dimensionality reduction method that uses cross-cell-type associations to identify multicellular programs (MCPs) and map the cell transcriptome as a function of its environment.
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Share the code for the figures published in the NBT #38

Closed xiangrong7 closed 8 months ago

xiangrong7 commented 1 year ago

Thank you for developing such an interesting package. Would you be willing to share the code for the figures published in the NBT so that we can reproduce the graphs and utilize them more effectively？

livnatje commented 1 year ago

Thank you @xiangrong7. Absolutely. We will provide this in the upcoming new release of DIALOGUE 2.0 along with additional features and examples.

xiangrong7 commented 1 year ago

I am really looking forward to your updates. However, would you be willing to share them with me now? I am eager to give them a try, especially the content similar to Figure 2f, Figure 3a, 3b, and 3c. My email address is 907037571@qq.com. Thank you once again.

livnatje commented 1 year ago

@xiangrong7, the code for reproducing the lung cancer spatial results is now provided here https://github.com/livnatje/DIALOGUE/wiki/Reproducing-the-lung-cancer-spatial-results-and-figures

Let us know if you have any additional questions.

Thanks, Livnat