Pysam adding support for FO and KS header fields

[GoogleCodeExporter]

Would like to add support for FO and KS fields in the header.

Please provide any additional information below.
Example of FO (flow order) and KS (key signal) tags:

FO:TACGTACGTCTGAGCATCGATCGATGTACAGCTACGTACGTCTGAGCATCGATCGATGTACAGCTACGTACGTCTGA
GCATCGATCGATGTACAGCTACGTACGTCTGAGCATCGATCGATGTACAGCTACGTACGTCTGAGCATCGATCGATGTAC
AGCTACGTACGTCTGAGCATCGATCGATGTACAGCTACGTACGTCTGAGCATCGATCGATGTACAGCTACGTACGTCTGA
GCATCGATCGATGTACAGCTACG KS:TCAG

Original issue reported on code.google.com by efts...@gmail.com on 7 Dec 2011 at 5:43

[GoogleCodeExporter]

Have you tried patching this part of the code: 
http://code.google.com/p/pysam/source/browse/pysam/csamtools.pyx#216

Original comment by cas...@gmail.com on 23 Jan 2012 at 4:00

[GoogleCodeExporter]

Attached is a patch.

Original comment by nilsho...@gmail.com on 14 Jun 2012 at 2:39

Attachments:

• diff.patch

[GoogleCodeExporter]

Thanks, applied.

Best wishes,
Andreas Heger

Original comment by andreas....@gmail.com on 7 Jul 2012 at 8:20

• Changed state: Fixed