Improve read.positions to report (read base, ref base)

[GoogleCodeExporter]

read.positions currently reports positions in the reference. 

I would like it (or another method) to report the pairwise list of (read base, 
ref base) where they are None if there is a gap.

I have a patch that does this on the position method.

Original issue reported on code.google.com by cas...@gmail.com on 27 Jan 2012 at 11:23

Attachments:

• posns.patch

[GoogleCodeExporter]

typo in that patch.

Do you think you will include this?

Original comment by cas...@gmail.com on 12 Mar 2012 at 4:39

Attachments:

• posns.patch

[GoogleCodeExporter]

Hi,

thanks, a good suggestion. I have kept the positions property, but added an 
aligned_pairs property.

Best wishes,
Andreas

Original comment by andreas....@gmail.com on 10 Jul 2012 at 10:16

• Changed state: Fixed