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lixin6135 / pysam

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pysam pileup max_depth > 8000 #93

Closed GoogleCodeExporter closed 8 years ago

GoogleCodeExporter commented 8 years ago 
Hi,

How do I change the default pileup max depth?

I am trying the following and this isn't working:

samfile.pileup( stepper = "samtools", fastafile = fastafile, max_depth = 100000)

Is this the right way to do this?

Thanks,
Praful

Original issue reported on code.google.com by aggarwal...@gmail.com on 18 May 2012 at 3:23

GoogleCodeExporter commented 8 years ago 
Yes. In what way is it not working - please give a complete example incl. data.

Original comment by andreas....@gmail.com on 20 Nov 2012 at 7:17

GoogleCodeExporter commented 8 years ago 
No update.

Original comment by andreas....@gmail.com on 27 Jun 2013 at 1:36