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liyu95 / DeepSimulator

The first deep learning based Nanopore simulator which can simulate the process of Nanopore sequencing.
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-nan of 0 (pass 0 + fail 0) reads passed base-calling #57

Open liushuqing506 opened 1 year ago

liushuqing506 commented 1 year ago

use: singularity exec -e -B /data:/data deepsimulator.sif /deepsimulator/DeepSimulator/deep_simulator.sh -i example/artificial_human_chr22.fasta -B 2

bug： 0% 10 20 30 40 50 60 70 80 90 100% |----|----|----|----|----|----|----|----|----|----|

Caller time: 101 ms, Samples called: 0, samples/s: 0 Finishing up any open output files. Basecalling completed successfully. Basecalling finished! Checking the read accuracy... Here is the mapping identity: -nan of 0 (pass 0 + fail 0) reads passed base-calling.

question: inputdata : example/artificial_human_chr22.fasta