How many studies have different provenances?

[christophe-rd]

Linking it to #44 !

The first step is to check how many studies have different provenances.

Second, I'll use Deirdre's code and plot all the different studies and add the provenance as factors in the different plots. E.g. study 1 is the %germination by the chill duration with different slopes for different provenances.

[lizzieinvancouver]

@wangxm-forest and @christophe-rd are team provenance ! Steps to aim for are:

• [ ] Subset down to studies with multiple provenances
• [ ] aim to subset to unique treatments
• [ ] make a plot for each unique combo of response variable by continuous predictor variable

See how it goes and report back!

[christophe-rd]

@lizzieinvancouver I subsetted down to how many studies have multiple provenances and it is 44! However, there could be some changes when we include the cleaned coordinates in the egret clean file....

Here's a plot showing in Y the number of provenances (>1) and in X, the number of studies with this value:

Here's the location of the short script I created.

[lizzieinvancouver]

@christophe-rd Nice! I if you could print out a quick ggplot map or such that color codes by studyID, then I think we could close this.

[christophe-rd]

@lizzieinvancouver sorry for the slow reply! Here it is: multipleprovenancesmap.pdf

Could you please confirm this is what you had in mind?

[christophe-rd]

Also, during the meeting we discussed the two other points :

@wangxm-forest and @christophe-rd are team provenance ! Steps to aim for are:

• [ ] Subset down to studies with multiple provenances
• [ ] aim to subset to unique treatments
• [ ] make a plot for each unique combo of response variable by continuous predictor variable

See how it goes and report back!

@lizzieinvancouver None of us were able to remember what we needed to do for these. Do you have details on what @wangxm-forest and I should do to complete these steps?

[lizzieinvancouver]

@christophe-rd The map looks good! But I think it could be helpful to make maps where you perhaps color code by response and subset to common treatments... but we have not totally finalized the common treatments so we could pause on this until we have that solved.

[christophe-rd]

@christophe-rd The map looks good! But I think it could be helpful to make maps where you perhaps color code by response and subset to common treatments... but we have not totally finalized the common treatments so we could pause on this until we have that solved.

Ok sounds good. Thanks!