run models with just one dataset per continent

lizzieinvancouver / ospree

Budbreak review paper database

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run models with just one dataset per continent #385

Open lizzieinvancouver opened 4 years ago

lizzieinvancouver commented 4 years ago

@dbuona Compare answers using just two datasets: one from each continent.... use a study with max species on each continent

dbuona commented 3 years ago

The European dataset with most species is Laube14a and North America is Flynn18. Totals 593 rows of data which may be too small for our models. I ran 6000 iter, 5000 warmup adapt_delta .99 and still had 12 divergent transitions, bad effective sample sizes and Rhats and missing Bayes fractions (whatever that is).

Thoughts on how to proceed?

lizzieinvancouver commented 3 years ago

@dbuona I can take a look; can you point me to the code?