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lizzieinvancouver / temporalvar

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make new scatterplots with tauI shown ... #24

Closed lizzieinvancouver closed 5 years ago

lizzieinvancouver commented 5 years ago

check that tauI==tauP leads to ONE SPECIES in stationary period ... explains histogram bimodality

lizzieinvancouver commented 5 years ago

Worked on this today ... maybe done?

lizzieinvancouver commented 5 years ago

color-coding by what happens AFTER stationary period .... (not color-coding by what happens after non-stationary period) ... and color code by which species goes extinct!

lizzieinvancouver commented 5 years ago

Done plotting by Rstar, need to do tauI next!

lizzieinvancouver commented 5 years ago

Check that these make sense ... see 2nd and 3rd figure in folder, shouldn't Rstar and alpha win differently? Or they could be correct: that species has a DOUBLE advantage.

Make pts smaller!

ADD LINES to plot of where each should win (horizontal and vertical at 1 ... and add 1:1 line). Then color code by who wins.... in ALL FIGURES!

(1) Winning sp better in all ways (and it's sp 1) (2) Winning sp better in all ways (and it's sp 2) (3) Sp1 has Rstar advantage (lower alpha) (4) Sp2 has Rstar advantage (lower alpha)

Make plots of what goes extinct in STATIONARY period! So we can see how we filtered by the current environment.

Below I copied to our wiki pages for meeting notes ... [Why does coexistence space compress this with directional environmental change? ... Species have been filtered by current environment we are left with a set of species where R* and tracking trade-off .... then we directionally shift to a new environment ... so more FILTERING on top of filtering.

In stationary period: we created space for stabilizing mechanisms .... as we directionally shift we lose stabilizing mechanisms, you're left with equalizing mechanisms. ]

lizzieinvancouver commented 5 years ago

Plot colors by bfin at end of stationary period! Are the ones not going extinct just those with high biomass? I mean color code by bfin ratio ...

lizzieinvancouver commented 5 years ago

Need to also color-code the NONSTATIONARY dots with one left (ncoexist=1) by which sp won (1 or 2).

lizzieinvancouver commented 5 years ago

@donahuem Can you confirm where the bfin data are? I am not seeing them in the SummaryOut but could use another set of eyes ....

lizzieinvancouver commented 5 years ago

To summarize my tasks here:

  1. color-code the NONSTATIONARY dots with one left (ncoexist=1) by which sp won (1 or 2)
  2. ADD LINES to plot of where each should win (horizontal and vertical at 1 ... and add 1:1 line). Then color code by who wins.... in ALL FIGURES! (And while at that: Check that these make sense ... see 2nd and 3rd figure in folder, shouldn't Rstar and alpha win differently? Or they could be correct: that species has a DOUBLE advantage.) (Almost done as of 30 Oct 2018)
  3. Plot colors by bfin.ratio (need to build that) at end of stationary period! Are the ones not going extinct just those with high biomass? .. Need HELP!
  4. Make plots of what goes extinct in STATIONARY period! So we can see how we filtered by the current environment. (... I think this is done)
  5. Make pts smaller! (done)
lizzieinvancouver commented 5 years ago

Progress on pt 2 just above (commit 6cf8ad552b107d4d8cb0a06dd61c3600bca81d56); have done it for most of the original figures, still need to add to plots of stationary periods if we want it.

Also, to discuss with @donahuem ... not sure who wins in tauI by rstar, as depends on tauP ... no? And while I am here we should check my work!

lizzieinvancouver commented 5 years ago

Note to self: I really need to divide up this issue!

lizzieinvancouver commented 5 years ago

Dividing up this issue and closing today. Here is what I think is DONE ...

One last issue is bfin, see issue #37.