Clean existing NB

[lkorczowski]

• [x] clean path "\"
• [x] clean some hardcoded values
• [x] renamed properly files
• [x] git-lfs for *.pdf in data/
• [x] renamed pickles to *.pk
• [x] added time count for long loop

[review-notebook-app[bot]]

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[codecov[bot]]

Codecov Report

Merging #53 into master will not change coverage. The diff coverage is n/a.

@@            Coverage Diff            @@
##            master       #53   +/-   ##
=========================================
  Coverage   100.00%   100.00%           
=========================================
  Files           12        12           
  Lines          575       575           
=========================================
  Hits           575       575           

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