Possibility of training the model to predict pepide with modifications

lkytal / PepNet

The state of the art Deep CNN neural network for de novo sequencing of tandem mass spectra

https://denovo.predfull.com/

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Possibility of training the model to predict pepide with modifications #5

Open irleader opened 10 months ago

irleader commented 10 months ago

Hi,

Our dataset have lots of modifications which are important, is it possible to modify the model a bit, such that we can train PepNet from scratch by ourselves to be able to include modifications? Otherwise we are still unable to use PepNet for our work.

Best regards

lkytal commented 7 months ago

Yes, and we expect to release new models that support common modifications. And if you have good training data, it can help us refine our model if you could share some of your data, thanks