error compiling mp-est 2.0

Aannaw commented 3 years ago

Hello,

I am facing errors using mp-est 2.0, at the compilation step . I am running on the platform of linux, First I instlall mp-est 2.0 by git clone https://github.com/lliu1871/mp-est.git, and then I go into the directory of src, set ARCHITECTURE to unix in the makefile and set COLLAPSEBRLENS to -1.0 in the mpest.h. Finally I make in the directory of src and I get the error: gcc -DUNIX_VERSION -O3 -Wall -Wno-uninitialized -lm mpest.o tool.o /lib/libm.so -o mpest /lib/libm.so: error adding symbols: File in wrong format collect2: error: ld returned 1 exit status make: *** [: mpest] Error 1 Thank you in advance for any advice regarding the error。

lliu1871 commented 3 years ago

Sorry for the late response. I just saw your message. The linux binary mpest2.0 has been generated in the folder "linux". You should be able to run mpest by typing mpest2.0 inputfile

jaum20 commented 2 years ago

I am facing errors using mp-est 2.0, at the compilation step .

any luck with this?

lliu1871 commented 2 years ago

Please describe what compilation errors are. Are you using Mac, windows, or Linux?

Liang


Liang Liu
Professor and Graduate coordinator
Department of Statistics
Institute of Bioinformatics
University of Georgia
https://phylolab.franklinresearch.uga.edu/

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I am facing errors using mp-est 2.0, at the compilation step .

any luck with this?

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jaum20 commented 2 years ago

Please describe what compilation errors are. Are you using Mac, windows, or Linux? Liang ~~~~~~~~~ Liang Liu Professor and Graduate coordinator Department of Statistics Institute of Bioinformatics University of Georgia https://phylolab.franklinresearch.uga.edu/ From: @.> Sent: Thursday, October 13, 2022 3:38 PM To: @.> Cc: Liang @.>; @.> Subject: Re: [lliu1871/mp-est] error compiling mp-est 2.0 (#2) [EXTERNAL SENDER - PROCEED CAUTIOUSLY] I am facing errors using mp-est 2.0, at the compilation step . any luck with this? — Reply to this email directly, view it on GitHub<#2 (comment)>, or unsubscribehttps://github.com/notifications/unsubscribe-auth/ACZITQVLS4ZB5RCIKFRP5I3WDBQMZANCNFSM5AECC6NQ. You are receiving this because you commented.Message ID: @.***>

I'm using Linux. The errors are identical to the @Aannaw ones. Nothing has been generated in the folder "linux

lliu1871 commented 2 years ago

I have fixed the problem. It should be compilable on linux. I also add a linux binary to the Github repository.

Liang

Liang Liu Graduate Coordinator Department of Statistics Institute of Bioinformatics University of Georgia Phylogenetics Lab | Phylogenetics Lab (uga.edu)https://faculty.franklin.uga.edu/lliu/

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On Oct 21, 2022, at 11:26 AM, jaum20 @.**@.>> wrote:

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Please describe what compilation errors are. Are you using Mac, windows, or Linux? Liang ~~~~~~~~~ Liang Liu Professor and Graduate coordinator Department of Statistics Institute of Bioinformatics University of Georgia https://phylolab.franklinresearch.uga.edu/ From: @.> Sent: Thursday, October 13, 2022 3:38 PM To: @.> Cc: Liang @.>; @.> Subject: Re: [lliu1871/mp-est] error compiling mp-est 2.0 (#2https://github.com/lliu1871/mp-est/issues/2) [EXTERNAL SENDER - PROCEED CAUTIOUSLY] I am facing errors using mp-est 2.0, at the compilation step . any luck with this? — Reply to this email directly, view it on GitHub<#2 (comment)https://github.com/lliu1871/mp-est/issues/2#issuecomment-1278097178>, or unsubscribehttps://github.com/notifications/unsubscribe-auth/ACZITQVLS4ZB5RCIKFRP5I3WDBQMZANCNFSM5AECC6NQ. You are receiving this because you commented.Message ID: @.***>

I'm using Linux. The errors are identical to the @Aannawhttps://github.com/Aannaw ones. Nothing has been generated in the folder "linux

— Reply to this email directly, view it on GitHubhttps://github.com/lliu1871/mp-est/issues/2#issuecomment-1287120651, or unsubscribehttps://github.com/notifications/unsubscribe-auth/ACZITQSU5PGKFU2PIFG6AHTWEKY3BANCNFSM5AECC6NQ. You are receiving this because you commented.Message ID: @.***>

lliu1871 / mp-est

error compiling mp-est 2.0 #2

Liang