Open zoedennehy opened 1 year ago
Sourirewang
commented
1 year ago Hello, @zoedennehy, sorry to bother you. Have you found a solution? I encountered the same error (Segmentation fault), and the taxa number in my gene trees also varies.
Best wishes, Sourire
zoedennehy
commented
1 year ago Hi @Sourirewang,
Unfortunately, I have not been able to find a solution! If you are able to get MP-EST to run, please let me know as it would be great to include the results in my analysis.
Best wishes, Zoë
vinjlynch
commented
1 year ago Having a similar problem with a large dataset (>13k trees, and 250 species), has anyone found a solution?
Best, Vinny
lliu1871
commented
1 year ago In mpest.h, the current setting is
Please change it to
and recompile the source code.
vinjlynch
commented
1 year ago Thanks for the quick reply! I changed NTAXA to 300, but I still get the segmentation fault (the testgenetree example runs fine). Any other suggestions?
lliu1871
commented
1 year ago Can you send me the input file? my email is @.**@.>.
Liang Liu Graduate Advisor Department of Statistics Institute of Bioinformatics University of Georgia Phylogenetics Lab | Phylogenetics Lab (uga.edu)https://faculty.franklin.uga.edu/lliu/
On Nov 9, 2023, at 9:44 AM, vinjlynch @.***> wrote:
[EXTERNAL SENDER - PROCEED CAUTIOUSLY]
Thanks for the quick reply! I changed NTAXA to 300, but I still get the segmentation fault (the testgenetree example runs fine). Any other suggestions?
— Reply to this email directly, view it on GitHubhttps://github.com/lliu1871/mp-est/issues/5#issuecomment-1803966505, or unsubscribehttps://github.com/notifications/unsubscribe-auth/ACZITQXZBYPAX4ITUQKYASLYDTT6VAVCNFSM6AAAAAAYKRNWYCVHI2DSMVQWIX3LMV43OSLTON2WKQ3PNVWWK3TUHMYTQMBTHE3DMNJQGU. You are receiving this because you commented.Message ID: @.***>
vinjlynch
commented
1 year ago Thanks, and happy to. Your email address is still hidden, is it ****@uga.edu?
lliu1871
commented
1 year ago Yes, it is lliu at uga dot edu.
Liang Liu Graduate Advisor Department of Statistics Institute of Bioinformatics University of Georgia Phylogenetics Lab | Phylogenetics Lab (uga.edu)https://faculty.franklin.uga.edu/lliu/
On Nov 9, 2023, at 11:42 AM, vinjlynch @.***> wrote:
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Thanks, and happy to. Your email address is still hidden, is it @.***?
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lovelynewGao
commented
9 months ago Yes, it is lliu at uga dot edu. Liang ------------------------------------- Liang Liu Graduate Advisor Department of Statistics Institute of Bioinformatics University of Georgia Phylogenetics Lab | Phylogenetics Lab (uga.edu)https://faculty.franklin.uga.edu/lliu/ On Nov 9, 2023, at 11:42 AM, vinjlynch @.> wrote: [EXTERNAL SENDER - PROCEED CAUTIOUSLY] Thanks, and happy to. Your email address is still hidden, is it @.? — Reply to this email directly, view it on GitHub<#5 (comment)>, or unsubscribehttps://github.com/notifications/unsubscribe-auth/ACZITQWKONQQHDWONR7W6EDYDUBXJAVCNFSM6AAAAAAYKRNWYCVHI2DSMVQWIX3LMV43OSLTON2WKQ3PNVWWK3TUHMYTQMBUGE3TSOBWGE. You are receiving this because you commented.Message ID: @.***>
sorry to bother you, have you a solution about this error? I have encountered the same error of Segmentation fault (core dumped). And I form my input file just like the example testgenetree file, so I have no idea about the error. Could you please give me some advice?
vinjlynch
commented
9 months ago Unfortunately, it was never resolved; if you find a solution, let me know!
Best, Vinny
Vincent J. Lynch, Ph.D. Associate Professor Department of Biological Sciences University at Buffalo, SUNY 551 Cooke Hall Buffalo NY, 14260
@.*** https://devoevomedlab.cargo.site https://scholar.google.com/citations?user=PBV6PjEAAAAJ&hl=en
“... the most useful thing we can do is to repudiate, and so we repudiate” – I. Turgenev, Fathers and Sons (1862)
"There is a grandeur in this view of life, with its several powers, having been originally breathed into a few forms or into one; and that whilst this planet has gone on cycling according to the fixed laws of gravity, from so simple a beginning endless forms most beautiful and most wonderful have been, and are being, evolved.” – C. Darwin, On The Origin of Species (1859)
On Feb 28, 2024, at 9:22 AM, Lovelynew Gao @.***> wrote:
You don't often get email from @.*** Learn why this is important https://aka.ms/LearnAboutSenderIdentification
Yes, it is lliu at uga dot edu. Liang ------------------------------------- Liang Liu Graduate Advisor Department of Statistics Institute of Bioinformatics University of Georgia Phylogenetics Lab | Phylogenetics Lab (uga.edu)https://faculty.franklin.uga.edu/lliu/ https://nam12.safelinks.protection.outlook.com/?url=https%3A%2F%2Ffaculty.franklin.uga.edu%2Flliu%2F&data=05%7C02%7Cvjlynch%40buffalo.edu%7Ca0c5956788ee4613066f08dc3868af04%7C96464a8af8ed40b199e25f6b50a20250%7C0%7C0%7C638447269463608932%7CUnknown%7CTWFpbGZsb3d8eyJWIjoiMC4wLjAwMDAiLCJQIjoiV2luMzIiLCJBTiI6Ik1haWwiLCJXVCI6Mn0%3D%7C0%7C%7C%7C&sdata=a%2FLHOyXhmkzitgXWwyXqD3HLvYnaLgkv37fLJVihm50%3D&reserved=0 On Nov 9, 2023, at 11:42 AM, vinjlynch @.> wrote: [EXTERNAL SENDER - PROCEED CAUTIOUSLY] Thanks, and happy to. Your email address is still hidden, is it @.? — Reply to this email directly, view it on GitHub<#5 (comment) https://nam12.safelinks.protection.outlook.com/?url=https%3A%2F%2Fgithub.com%2Flliu1871%2Fmp-est%2Fissues%2F5%23issuecomment-1804179861&data=05%7C02%7Cvjlynch%40buffalo.edu%7Ca0c5956788ee4613066f08dc3868af04%7C96464a8af8ed40b199e25f6b50a20250%7C0%7C0%7C638447269463621223%7CUnknown%7CTWFpbGZsb3d8eyJWIjoiMC4wLjAwMDAiLCJQIjoiV2luMzIiLCJBTiI6Ik1haWwiLCJXVCI6Mn0%3D%7C0%7C%7C%7C&sdata=k2xJOcQp7P3THUsnNOFpm8Ge5hAxca7nlnts%2FOUFstI%3D&reserved=0>, or unsubscribehttps://github.com/notifications/unsubscribe-auth/ACZITQWKONQQHDWONR7W6EDYDUBXJAVCNFSM6AAAAAAYKRNWYCVHI2DSMVQWIX3LMV43OSLTON2WKQ3PNVWWK3TUHMYTQMBUGE3TSOBWGE https://nam12.safelinks.protection.outlook.com/?url=https%3A%2F%2Fgithub.com%2Fnotifications%2Funsubscribe-auth%2FACZITQWKONQQHDWONR7W6EDYDUBXJAVCNFSM6AAAAAAYKRNWYCVHI2DSMVQWIX3LMV43OSLTON2WKQ3PNVWWK3TUHMYTQMBUGE3TSOBWGE&data=05%7C02%7Cvjlynch%40buffalo.edu%7Ca0c5956788ee4613066f08dc3868af04%7C96464a8af8ed40b199e25f6b50a20250%7C0%7C0%7C638447269463630991%7CUnknown%7CTWFpbGZsb3d8eyJWIjoiMC4wLjAwMDAiLCJQIjoiV2luMzIiLCJBTiI6Ik1haWwiLCJXVCI6Mn0%3D%7C0%7C%7C%7C&sdata=j3dmyZRc3edZHvcabIT%2FuZZg2xaEwCO04cvh5e8XR5c%3D&reserved=0. You are receiving this because you commented.Message ID: @.***>
sorry to bother you, have you a solution about this error? I have encountered the same error of Segmentation fault (core dumped). And I form my input file just like the example testgenetree file, so I have no idea about the error. Could you please give me some advice?
— Reply to this email directly, view it on GitHub https://nam12.safelinks.protection.outlook.com/?url=https%3A%2F%2Fgithub.com%2Flliu1871%2Fmp-est%2Fissues%2F5%23issuecomment-1969089502&data=05%7C02%7Cvjlynch%40buffalo.edu%7Ca0c5956788ee4613066f08dc3868af04%7C96464a8af8ed40b199e25f6b50a20250%7C0%7C0%7C638447269463638784%7CUnknown%7CTWFpbGZsb3d8eyJWIjoiMC4wLjAwMDAiLCJQIjoiV2luMzIiLCJBTiI6Ik1haWwiLCJXVCI6Mn0%3D%7C0%7C%7C%7C&sdata=sCgF9jj5ktYFW9VZmz205QHJIepxaLLOE3ub%2FCpKhGo%3D&reserved=0, or unsubscribe https://nam12.safelinks.protection.outlook.com/?url=https%3A%2F%2Fgithub.com%2Fnotifications%2Funsubscribe-auth%2FANAFRRAQLUJZPNKDA6TVLULYV44R7AVCNFSM6AAAAAAYKRNWYCVHI2DSMVQWIX3LMV43OSLTON2WKQ3PNVWWK3TUHMYTSNRZGA4DSNJQGI&data=05%7C02%7Cvjlynch%40buffalo.edu%7Ca0c5956788ee4613066f08dc3868af04%7C96464a8af8ed40b199e25f6b50a20250%7C0%7C0%7C638447269463645783%7CUnknown%7CTWFpbGZsb3d8eyJWIjoiMC4wLjAwMDAiLCJQIjoiV2luMzIiLCJBTiI6Ik1haWwiLCJXVCI6Mn0%3D%7C0%7C%7C%7C&sdata=wAMFLdGBXagNtQx2s9mLRoSlG8gfbXVqgKEX4cpNybk%3D&reserved=0. You are receiving this because you commented.
lliu1871
commented
9 months ago Could you send me your input tree file?
Liang
Liang Liu
Graduate advisor
Department of Statistics
Institute of Bioinformatics
University of Georgia
Phylogenetics Lab | Phylogenetics Lab (uga.edu)<http://faculty.franklin.uga.edu/lliu/>
From: Lovelynew Gao ***@***.***>
Date: Wednesday, February 28, 2024 at 09:22
To: lliu1871/mp-est ***@***.***>
Cc: Liang Liu ***@***.***>, Comment ***@***.***>
Subject: Re: [lliu1871/mp-est] Issues Running MP-EST (v3.0) (Issue #5)
You don't often get email from ***@***.*** Learn why this is important<https://aka.ms/LearnAboutSenderIdentification>
[EXTERNAL SENDER - PROCEED CAUTIOUSLY]
Yes, it is lliu at uga dot edu. Liang ------------------------------------- Liang Liu Graduate Advisor Department of Statistics Institute of Bioinformatics University of Georgia Phylogenetics Lab | Phylogenetics Lab (uga.edu)https://faculty.franklin.uga.edu/lliu/ On Nov 9, 2023, at 11:42 AM, vinjlynch @.> wrote: [EXTERNAL SENDER - PROCEED CAUTIOUSLY] Thanks, and happy to. Your email address is still hidden, is it @.? — Reply to this email directly, view it on GitHub<#5 (comment)<https://github.com/lliu1871/mp-est/issues/5#issuecomment-1804179861>>, or unsubscribehttps://github.com/notifications/unsubscribe-auth/ACZITQWKONQQHDWONR7W6EDYDUBXJAVCNFSM6AAAAAAYKRNWYCVHI2DSMVQWIX3LMV43OSLTON2WKQ3PNVWWK3TUHMYTQMBUGE3TSOBWGE. You are receiving this because you commented.Message ID: @.***>
sorry to bother you, have you a solution about this error? I have encountered the same error of Segmentation fault (core dumped). And I form my input file just like the example testgenetree file, so I have no idea about the error. Could you please give me some advice?
—
Reply to this email directly, view it on GitHub<https://github.com/lliu1871/mp-est/issues/5#issuecomment-1969089502>, or unsubscribe<https://github.com/notifications/unsubscribe-auth/ACZITQSW3DDI4U4VQSAVFQTYV44R7AVCNFSM6AAAAAAYKRNWYCVHI2DSMVQWIX3LMV43OSLTON2WKQ3PNVWWK3TUHMYTSNRZGA4DSNJQGI>.
You are receiving this because you commented.Message ID: ***@***.***>Vinny,
I thought it was resolved. Sorry if not. Please send me the input tree file.
Liang
Liang Liu
Graduate advisor
Department of Statistics
Institute of Bioinformatics
University of Georgia
Phylogenetics Lab | Phylogenetics Lab (uga.edu)<http://faculty.franklin.uga.edu/lliu/>
From: vinjlynch ***@***.***>
Date: Wednesday, February 28, 2024 at 09:35
To: lliu1871/mp-est ***@***.***>
Cc: Liang Liu ***@***.***>, Comment ***@***.***>
Subject: Re: [lliu1871/mp-est] Issues Running MP-EST (v3.0) (Issue #5)
You don't often get email from ***@***.*** Learn why this is important<https://aka.ms/LearnAboutSenderIdentification>
[EXTERNAL SENDER - PROCEED CAUTIOUSLY]
Unfortunately, it was never resolved; if you find a solution, let me know!
Best,
Vinny
Vincent J. Lynch, Ph.D.
Associate Professor
Department of Biological Sciences
University at Buffalo, SUNY
551 Cooke Hall
Buffalo NY, 14260
***@***.***
https://devoevomedlab.cargo.site
https://scholar.google.com/citations?user=PBV6PjEAAAAJ&hl=en
“... the most useful thing we can do is to repudiate, and so we repudiate” – I. Turgenev, Fathers and Sons (1862)
"There is a grandeur in this view of life, with its several powers,
having been originally breathed into a few forms or into one; and that
whilst this planet has gone on cycling according to the fixed laws of
gravity, from so simple a beginning endless forms most beautiful and most
wonderful have been, and are being, evolved.” – C. Darwin, On The Origin of Species (1859)
> On Feb 28, 2024, at 9:22 AM, Lovelynew Gao ***@***.***> wrote:
>
> You don't often get email from ***@***.*** Learn why this is important <https://aka.ms/LearnAboutSenderIdentification>
>
> Yes, it is lliu at uga dot edu. Liang ------------------------------------- Liang Liu Graduate Advisor Department of Statistics Institute of Bioinformatics University of Georgia Phylogenetics Lab | Phylogenetics Lab (uga.edu)https://faculty.franklin.uga.edu/lliu/ <https://nam12.safelinks.protection.outlook.com/?url=https%3A%2F%2Ffaculty.franklin.uga.edu%2Flliu%2F&data=05%7C02%7Cvjlynch%40buffalo.edu%7Ca0c5956788ee4613066f08dc3868af04%7C96464a8af8ed40b199e25f6b50a20250%7C0%7C0%7C638447269463608932%7CUnknown%7CTWFpbGZsb3d8eyJWIjoiMC4wLjAwMDAiLCJQIjoiV2luMzIiLCJBTiI6Ik1haWwiLCJXVCI6Mn0%3D%7C0%7C%7C%7C&sdata=a%2FLHOyXhmkzitgXWwyXqD3HLvYnaLgkv37fLJVihm50%3D&reserved=0> On Nov 9, 2023, at 11:42 AM, vinjlynch @.> wrote: [EXTERNAL SENDER - PROCEED CAUTIOUSLY] Thanks, and happy to. Your email address is still hidden, is it @.? — Reply to this email directly, view it on GitHub<#5 (comment) <https://nam12.safelinks.protection.outlook.com/?url=https%3A%2F%2Fgithub.com%2Flliu1871%2Fmp-est%2Fissues%2F5%23issuecomment-1804179861&data=05%7C02%7Cvjlynch%40buffalo.edu%7Ca0c5956788ee4613066f08dc3868af04%7C96464a8af8ed40b199e25f6b50a20250%7C0%7C0%7C638447269463621223%7CUnknown%7CTWFpbGZsb3d8eyJWIjoiMC4wLjAwMDAiLCJQIjoiV2luMzIiLCJBTiI6Ik1haWwiLCJXVCI6Mn0%3D%7C0%7C%7C%7C&sdata=k2xJOcQp7P3THUsnNOFpm8Ge5hAxca7nlnts%2FOUFstI%3D&reserved=0>>, or unsubscribehttps://github.com/notifications/unsubscribe-auth/ACZITQWKONQQHDWONR7W6EDYDUBXJAVCNFSM6AAAAAAYKRNWYCVHI2DSMVQWIX3LMV43OSLTON2WKQ3PNVWWK3TUHMYTQMBUGE3TSOBWGE <https://nam12.safelinks.protection.outlook.com/?url=https%3A%2F%2Fgithub.com%2Fnotifications%2Funsubscribe-auth%2FACZITQWKONQQHDWONR7W6EDYDUBXJAVCNFSM6AAAAAAYKRNWYCVHI2DSMVQWIX3LMV43OSLTON2WKQ3PNVWWK3TUHMYTQMBUGE3TSOBWGE&data=05%7C02%7Cvjlynch%40buffalo.edu%7Ca0c5956788ee4613066f08dc3868af04%7C96464a8af8ed40b199e25f6b50a20250%7C0%7C0%7C638447269463630991%7CUnknown%7CTWFpbGZsb3d8eyJWIjoiMC4wLjAwMDAiLCJQIjoiV2luMzIiLCJBTiI6Ik1haWwiLCJXVCI6Mn0%3D%7C0%7C%7C%7C&sdata=j3dmyZRc3edZHvcabIT%2FuZZg2xaEwCO04cvh5e8XR5c%3D&reserved=0>. You are receiving this because you commented.Message ID: @.***>
>
> sorry to bother you, have you a solution about this error? I have encountered the same error of Segmentation fault (core dumped). And I form my input file just like the example testgenetree file, so I have no idea about the error. Could you please give me some advice?
>
> —
> Reply to this email directly, view it on GitHub <https://nam12.safelinks.protection.outlook.com/?url=https%3A%2F%2Fgithub.com%2Flliu1871%2Fmp-est%2Fissues%2F5%23issuecomment-1969089502&data=05%7C02%7Cvjlynch%40buffalo.edu%7Ca0c5956788ee4613066f08dc3868af04%7C96464a8af8ed40b199e25f6b50a20250%7C0%7C0%7C638447269463638784%7CUnknown%7CTWFpbGZsb3d8eyJWIjoiMC4wLjAwMDAiLCJQIjoiV2luMzIiLCJBTiI6Ik1haWwiLCJXVCI6Mn0%3D%7C0%7C%7C%7C&sdata=sCgF9jj5ktYFW9VZmz205QHJIepxaLLOE3ub%2FCpKhGo%3D&reserved=0>, or unsubscribe <https://nam12.safelinks.protection.outlook.com/?url=https%3A%2F%2Fgithub.com%2Fnotifications%2Funsubscribe-auth%2FANAFRRAQLUJZPNKDA6TVLULYV44R7AVCNFSM6AAAAAAYKRNWYCVHI2DSMVQWIX3LMV43OSLTON2WKQ3PNVWWK3TUHMYTSNRZGA4DSNJQGI&data=05%7C02%7Cvjlynch%40buffalo.edu%7Ca0c5956788ee4613066f08dc3868af04%7C96464a8af8ed40b199e25f6b50a20250%7C0%7C0%7C638447269463645783%7CUnknown%7CTWFpbGZsb3d8eyJWIjoiMC4wLjAwMDAiLCJQIjoiV2luMzIiLCJBTiI6Ik1haWwiLCJXVCI6Mn0%3D%7C0%7C%7C%7C&sdata=wAMFLdGBXagNtQx2s9mLRoSlG8gfbXVqgKEX4cpNybk%3D&reserved=0>.
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You are receiving this because you commented.Message ID: ***@***.***>Could you send me your input tree file? Liang ``````````````````````````````````````````````````````````````````````````````` Liang Liu Graduate advisor Department of Statistics Institute of Bioinformatics University of Georgia Phylogenetics Lab | Phylogenetics Lab (uga.edu)http://faculty.franklin.uga.edu/lliu/ From: Lovelynew Gao @.> Date: Wednesday, February 28, 2024 at 09:22 To: lliu1871/mp-est @.> Cc: Liang Liu @.>, Comment @.> Subject: Re: [lliu1871/mp-est] Issues Running MP-EST (v3.0) (Issue #5) You don't often get email from @. Learn why this is importanthttps://aka.ms/LearnAboutSenderIdentification [EXTERNAL SENDER - PROCEED CAUTIOUSLY] Yes, it is lliu at uga dot edu. Liang ------------------------------------- Liang Liu Graduate Advisor Department of Statistics Institute of Bioinformatics University of Georgia Phylogenetics Lab | Phylogenetics Lab (uga.edu)https://faculty.franklin.uga.edu/lliu/ On Nov 9, 2023, at 11:42 AM, vinjlynch @.> wrote: [EXTERNAL SENDER - PROCEED CAUTIOUSLY] Thanks, and happy to. Your email address is still hidden, is it @.? — Reply to this email directly, view it on GitHub<#5 (comment)<#5 (comment)>>, or unsubscribehttps://github.com/notifications/unsubscribe-auth/ACZITQWKONQQHDWONR7W6EDYDUBXJAVCNFSM6AAAAAAYKRNWYCVHI2DSMVQWIX3LMV43OSLTON2WKQ3PNVWWK3TUHMYTQMBUGE3TSOBWGE. You are receiving this because you commented.Message ID: @.> sorry to bother you, have you a solution about this error? I have encountered the same error of Segmentation fault (core dumped). And I form my input file just like the example testgenetree file, so I have no idea about the error. Could you please give me some advice? — Reply to this email directly, view it on GitHub<#5 (comment)>, or unsubscribehttps://github.com/notifications/unsubscribe-auth/ACZITQSW3DDI4U4VQSAVFQTYV44R7AVCNFSM6AAAAAAYKRNWYCVHI2DSMVQWIX3LMV43OSLTON2WKQ3PNVWWK3TUHMYTSNRZGA4DSNJQGI. You are receiving this because you commented.Message ID: @.***>
thank you for your reply, I have send it to your email. Thanks~
jungleblack007
commented
8 months ago Vinny, I thought it was resolved. Sorry if not. Please send me the input tree file. Liang ``````````````````````````````````````````````````````````````````````````````` Liang Liu Graduate advisor Department of Statistics Institute of Bioinformatics University of Georgia Phylogenetics Lab | Phylogenetics Lab (uga.edu)http://faculty.franklin.uga.edu/lliu/ From: vinjlynch @.> Date: Wednesday, February 28, 2024 at 09:35 To: lliu1871/mp-est @.> Cc: Liang Liu @.>, Comment @.> Subject: Re: [lliu1871/mp-est] Issues Running MP-EST (v3.0) (Issue #5) You don't often get email from @. Learn why this is importanthttps://aka.ms/LearnAboutSenderIdentification [EXTERNAL SENDER - PROCEED CAUTIOUSLY] Unfortunately, it was never resolved; if you find a solution, let me know! Best, Vinny Vincent J. Lynch, Ph.D. Associate Professor Department of Biological Sciences University at Buffalo, SUNY 551 Cooke Hall Buffalo NY, 14260 @. https://devoevomedlab.cargo.site https://scholar.google.com/citations?user=PBV6PjEAAAAJ&hl=en “... the most useful thing we can do is to repudiate, and so we repudiate” – I. Turgenev, Fathers and Sons (1862) "There is a grandeur in this view of life, with its several powers, having been originally breathed into a few forms or into one; and that whilst this planet has gone on cycling according to the fixed laws of gravity, from so simple a beginning endless forms most beautiful and most wonderful have been, and are being, evolved.” – C. Darwin, On The Origin of Species (1859) On Feb 28, 2024, at 9:22 AM, Lovelynew Gao @.> wrote: You don't often get email from @. Learn why this is important https://aka.ms/LearnAboutSenderIdentification Yes, it is lliu at uga dot edu. Liang ------------------------------------- Liang Liu Graduate Advisor Department of Statistics Institute of Bioinformatics University of Georgia Phylogenetics Lab | Phylogenetics Lab (uga.edu)https://faculty.franklin.uga.edu/lliu/ https://nam12.safelinks.protection.outlook.com/?url=https%3A%2F%2Ffaculty.franklin.uga.edu%2Flliu%2F&data=05%7C02%7Cvjlynch%40buffalo.edu%7Ca0c5956788ee4613066f08dc3868af04%7C96464a8af8ed40b199e25f6b50a20250%7C0%7C0%7C638447269463608932%7CUnknown%7CTWFpbGZsb3d8eyJWIjoiMC4wLjAwMDAiLCJQIjoiV2luMzIiLCJBTiI6Ik1haWwiLCJXVCI6Mn0%3D%7C0%7C%7C%7C&sdata=a%2FLHOyXhmkzitgXWwyXqD3HLvYnaLgkv37fLJVihm50%3D&reserved=0 On Nov 9, 2023, at 11:42 AM, vinjlynch @.> wrote: [EXTERNAL SENDER - PROCEED CAUTIOUSLY] Thanks, and happy to. 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You are receiving this because you commented.Message ID: @.> sorry to bother you, have you a solution about this error? I have encountered the same error of Segmentation fault (core dumped). And I form my input file just like the example testgenetree file, so I have no idea about the error. 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I met the same segment fault with 10 species and 857 genes ... I will send you my file, thanks
Good afternoon,
I am having trouble running MP-EST v 3.0 both on my institution's linux cluster and on the research group's mac. Both times I am able to run the test dataset without any issues. It appears I have set up the nexus file in the same manner as the test file but my file will not run.
The error I am encountering is a segmentation fault and I can not find any specific reason relating to this software for it. I would like to run the analysis on 261 gene trees run in IQTree and rooted with Newick utilities. The number of taxa varies between in the gene trees varies between 98 to 80. Would this cause the analysis not to run?
Thank you in advance, Zoë