CNAG provided names and cellranger recongized files are not the same.
It would be great to have a small function to read the files and prepare a file with the renaming scheme.
Background:
CNAG provides files as: HKKF3DMXY_1_SI-TT-B21.fastq.gz which is the `.fastq.gz [cellranger recognizes](https://www.10xgenomics.com/support/software/cell-ranger/latest/analysis/inputs/cr-specifying-fastqs#file-naming-convention) files as:_S1_L00 _R_001.fastq.gz`
It should also help to organize when in a single CNAG project we receive multiple samples (and how to organize that in folders
CNAG provided names and cellranger recongized files are not the same. It would be great to have a small function to read the files and prepare a file with the renaming scheme.
Background:
CNAG provides files as: HKKF3DMXY_1_SI-TT-B21.fastq.gz which is the `.fastq.gz_S1_L00 _R_001.fastq.gz`
[cellranger recognizes](https://www.10xgenomics.com/support/software/cell-ranger/latest/analysis/inputs/cr-specifying-fastqs#file-naming-convention) files as:It should also help to organize when in a single CNAG project we receive multiple samples (and how to organize that in folders