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lmassier / hWAT_singlecell

meta-analysis of new and published human WAT single cell data
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cell types annotations #1

Open mjstrumillo opened 1 month ago

mjstrumillo commented 1 month ago

hi, this is a great paper and awesome CellTypist models, thanks for this!

I'm seeking for metadata that actually describes the Seurat objects you provide with the supplementary - in all the objects adipo.rds all.rds B.rds endo.rds ly.rds mast.rds my.rds omFAP.rds pvatFAP.rds scFAP.rds

the metadata consists of

orig.ident nCount_RNA nFeature_RNA percent.mt percent.MTRNR percent.MALAT1 percent.RP percent.HB.genes nCount_SCT nFeature_SCT UMAP_1 UMAP_2 tissue method

is there more metadata provided? like actual celltype you define? I looked through all doqnlaodable data, allso at Massier_1 - 4 which sadly contains no annotations at all. Can you advice? thank you

lmassier commented 1 month ago

Hej, I can share you a download link to the updated seurat objects (was limited in file size in the current upload repository) if you send me a mail (lucas.massier@ki.se). Will also try to upload them somewhere else, if you have any suggestions, please let me know (~30 GB).