lmaurits / BEASTling

A linguistics-focussed command line tool for generating BEAST XML files.
BSD 2-Clause "Simplified" License
20 stars 6 forks source link

Add stub for a clock with a prior on rates #191

Closed Anaphory closed 6 years ago

Anaphory commented 6 years ago

This does not need to be merged yet, it's still very much WIP and only here to inform you about its happening!

codecov-io commented 6 years ago

Codecov Report

Merging #191 into develop will increase coverage by 0.22%. The diff coverage is 92%.

Impacted file tree graph

@@             Coverage Diff             @@
##           develop     #191      +/-   ##
===========================================
+ Coverage    91.85%   92.08%   +0.22%     
===========================================
  Files           19       21       +2     
  Lines         2518     2565      +47     
===========================================
+ Hits          2313     2362      +49     
+ Misses         205      203       -2
Impacted Files Coverage Δ
beastling/beast_maps.py 100% <100%> (ø) :arrow_up:
beastling/report.py 94.5% <100%> (ø) :arrow_up:
beastling/beastxml.py 95.36% <100%> (+0.29%) :arrow_up:
beastling/distributions.py 90.58% <90.58%> (ø)
beastling/configuration.py 89.61% <92.85%> (+0.63%) :arrow_up:
beastling/clocks/prior.py 95% <95%> (ø)

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Anaphory commented 6 years ago

This is now nearly complete, the missing bit is the equivalent of super().__init__ for python2.

Anaphory commented 6 years ago

Done!

Fixes #192 for the strict clock. Does first steps to address #119 by providing a framework for distributions.

lmaurits commented 6 years ago

You've been busy!