Closed SimonGreenhill closed 5 years ago
[admin] basename = pano2 log_params = True [MCMC] chainlength = 500000 [languages] monophyletic = True exclusions = Nawa [model pano] data = pano-cldf/Wordlist-metadata.json model = binaryctmc gamma_categories = 10
Generates this logfile:
<logger fileName="pano2.log" id="tracelog" logEvery="50" sort="smart"> <log idref="prior" /> <log idref="likelihood" /> <log idref="posterior" /> <log idref="birthRate.t:beastlingTree" /> <log idref="birthRate.t:beastlingTree" /> <log id="treeStats" spec="beast.evolution.tree.TreeStatLogger" tree="@Tree.t:beastlingTree" /> <log idref="clockRate.c:default" /> <log idref="gammaShape.s:pano" /> </logger>
(note duplicate birthRate.t:beastlingTree)
birthRate.t:beastlingTree
Thanks for the report! This probably crept in with the switch to a more flexible tree prior system.
Generates this logfile:
(note duplicate
birthRate.t:beastlingTree
)