A linguistics-focussed command line tool for generating BEAST XML files.
BSD 2-Clause "Simplified" License
20
stars
6
forks
source link
LogNormal Relaxed Clock parameterized by “variance”, is actually “stdev in log space” #252
Open
Anaphory opened 4 years ago
The “variance” parameter introduced by the LogNormalRelaxedClock https://github.com/lmaurits/BEASTling/blob/1b958f3cda2da7b1769bde63e3c8b294de9e43d0/beastling/clocks/relaxed.py#L92-L97 is actually the standard deviation in logarithmic space of the clock https://github.com/lmaurits/BEASTling/blob/1b958f3cda2da7b1769bde63e3c8b294de9e43d0/beastling/clocks/relaxed.py#L140