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lmb-freiburg / Unet-Segmentation

The U-Net Segmentation plugin for Fiji (ImageJ)
https://lmb.informatik.uni-freiburg.de/resources/opensource/unet
GNU General Public License v3.0
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"caffe_unet was not found" When accessing from Windows #52

Closed Vector2020 closed 4 years ago

Vector2020 commented 5 years ago

Hi, I have set up caffe and everything else in Ubuntu 18 with Cuda 10.0 and cudnn. Actually I tested the unet segmentation plugin in the Ubuntu and it worked (I could segment an image with the unet plugin)! Now, I am trying to run the plugin in a windows 10 laptop. But after I enter the host name, user/password and press OK, I get the error : "caffe_unet was not found. Please specify your caffe_unet binary". Does anybody know how to solve this issue? Thanks! PS. I have already added the variables to the .bashrc and .profile. Also, I have checked the caffe_unet in the the terminal of Bitvise SSH client and it recognized caffe_unet.

Vector2020 commented 5 years ago

Hi @ThorstenFalk, Do you know how to resolve this issue? Thanks!

ThorstenFalk commented 5 years ago

If it works using your SSH client, it should also work using the plugin. It does nothing more than establishing an SSH connection end executing caffe_unet. Can you provide the corresponding output log? I assume it is boring and only contains something like U-Net segmentation plugin started and checking for caffe_unet. But if there is more it might be of interest.

Just to be sure: By working you mean, you connect and just type: caffe_unet and get the usage message, right?