search

lmb-freiburg / Unet-Segmentation

The U-Net Segmentation plugin for Fiji (ImageJ)
https://lmb.informatik.uni-freiburg.de/resources/opensource/unet
GNU General Public License v3.0
87 stars 25 forks source link

Fiji macro for batch detection #67

Open ayallavi opened 4 years ago

ayallavi commented 4 years ago

Hi,

I'm attaching an imageJ Fiji script of batch detection for validation of network outcome. The script basically covers the primary parameters needed to run the detection with basic ImageJ wrappers and outputs the results into a .csv file. To run the macro in ImageJ Fiji choose Plugins > Macros > Run... and choose the script file.

Hope this can help other users. UnetBatchDetection.ijm.txt

dean09131 commented 4 years ago

Thank you for your sharing, I am confused about how to fill in the password in the script, so the RSA is available.

ayallavi commented 4 years ago

Hello. In order to connect to the backend server without typing the password every time, you can generate the RSA key. If you're using windows 10 you can find instructions here: https://phoenixnap.com/kb/generate-ssh-key-windows-10 Good luck - hope this helps.