lmcai / Coalescent_simulation_and_gene_flow_detection

R and Python scripts used to simulate gene trees under coalescent model and detect gene flow using triple frequency
GNU General Public License v3.0
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sequences simulation #2

Open yongzhiyang2012 opened 2 years ago

yongzhiyang2012 commented 2 years ago

Dear Cai, When you simulate alignments with bppsuite, which species tree was used? The concatenation tree or the coalescent tree? In other words, the simulation should according to the branch length of substitution or coalescent unit?