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lmcinnes / pynndescent

A Python nearest neighbor descent for approximate nearest neighbors
BSD 2-Clause "Simplified" License
897 stars 105 forks source link

Tests fail: E SystemError: initialization of _internal failed without raising an exception #216

Closed yurivict closed 6 months ago

yurivict commented 1 year ago 
cd /usr/ports/math/py-pynndescent/work-py39/pynndescent-0.5.9 && /usr/bin/env XDG_DATA_HOME=/usr/ports/math/py-pynndescent/work-py39  XDG_CONFIG_HOME=/usr/ports/math/py-pynndescent/work-py39  XDG_CACHE_HOME=/usr/ports/math/py-pynndescent/work-py39/.cache  HOME=/usr/ports/math/py-pynndescent/work-py39 PATH=/usr/local/libexec/ccache:/usr/ports/math/py-pynndescent/work-py39/.bin:/home/yuri/bin:/sbin:/bin:/usr/sbin:/usr/bin:/usr/local/sbin:/usr/local/bin PKG_CONFIG_LIBDIR=/usr/ports/math/py-pynndescent/work-py39/.pkgconfig:/usr/local/libdata/pkgconfig:/usr/local/share/pkgconfig:/usr/libdata/pkgconfig MK_DEBUG_FILES=no MK_KERNEL_SYMBOLS=no SHELL=/bin/sh NO_LINT=YES LDSHARED="cc -shared" PYTHONDONTWRITEBYTECODE= PYTHONOPTIMIZE= PREFIX=/usr/local  LOCALBASE=/usr/local  CC="cc" CFLAGS="-O2 -pipe  -fstack-protector-strong -fno-strict-aliasing "  CPP="cpp" CPPFLAGS=""  LDFLAGS=" -fstack-protector-strong " LIBS=""  CXX="c++" CXXFLAGS="-O2 -pipe -fstack-protector-strong -fno-strict-aliasing  "  MANPREFIX="/usr/local" CCACHE_DIR="/tmp/.ccache" BSD_INSTALL_PROGRAM="install  -s -m 555"  BSD_INSTALL_LIB="install  -s -m 0644"  BSD_INSTALL_SCRIPT="install  -m 555"  BSD_INSTALL_DATA="install  -m 0644"  BSD_INSTALL_MAN="install  -m 444" /usr/local/bin/python3.9 -m pytest -k '' -rs -v -o addopts= 
========================================================================================== test session starts ==========================================================================================
platform freebsd13 -- Python 3.9.16, pytest-7.2.2, pluggy-1.0.0 -- /usr/local/bin/python3.9
cachedir: .pytest_cache
Using --randomly-seed=3757964323
hypothesis profile 'default' -> database=DirectoryBasedExampleDatabase('/usr/ports/math/py-pynndescent/work-py39/pynndescent-0.5.9/.hypothesis/examples')
rootdir: /usr/ports/math/py-pynndescent/work-py39/pynndescent-0.5.9
plugins: forked-1.4.0, cov-2.9.0, timeout-2.1.0, xdist-2.5.0, randomly-3.12.0, rerunfailures-10.1, flaky-3.7.0, env-0.6.2, freezegun-0.4.2, mock-3.10.0, hypothesis-6.71.0
collected 0 items / 1 error                                                                                                                                                                             

================================================================================================ ERRORS =================================================================================================
_____________________________________________________________________________________ ERROR collecting test session _____________________________________________________________________________________
/usr/local/lib/python3.9/importlib/__init__.py:127: in import_module
    return _bootstrap._gcd_import(name[level:], package, level)
<frozen importlib._bootstrap>:1030: in _gcd_import
    ???
<frozen importlib._bootstrap>:1007: in _find_and_load
    ???
<frozen importlib._bootstrap>:972: in _find_and_load_unlocked
    ???
<frozen importlib._bootstrap>:228: in _call_with_frames_removed
    ???
<frozen importlib._bootstrap>:1030: in _gcd_import
    ???
<frozen importlib._bootstrap>:1007: in _find_and_load
    ???
<frozen importlib._bootstrap>:972: in _find_and_load_unlocked
    ???
<frozen importlib._bootstrap>:228: in _call_with_frames_removed
    ???
<frozen importlib._bootstrap>:1030: in _gcd_import
    ???
<frozen importlib._bootstrap>:1007: in _find_and_load
    ???
<frozen importlib._bootstrap>:986: in _find_and_load_unlocked
    ???
<frozen importlib._bootstrap>:680: in _load_unlocked
    ???
<frozen importlib._bootstrap_external>:850: in exec_module
    ???
<frozen importlib._bootstrap>:228: in _call_with_frames_removed
    ???
pynndescent/__init__.py:3: in <module>
    import numba
/usr/local/lib/python3.9/site-packages/numba/__init__.py:42: in <module>
    from numba.np.ufunc import (vectorize, guvectorize, threading_layer,
/usr/local/lib/python3.9/site-packages/numba/np/ufunc/__init__.py:3: in <module>
    from numba.np.ufunc.decorators import Vectorize, GUVectorize, vectorize, guvectorize
/usr/local/lib/python3.9/site-packages/numba/np/ufunc/decorators.py:3: in <module>
    from numba.np.ufunc import _internal
E   SystemError: initialization of _internal failed without raising an exception
!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!! Interrupted: 1 error during collection !!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!
=========================================================================================== 1 error in 0.96s ============================================================================================
*** Error code 2

Version: 0.5.9 Python-3.9 FreeBSD 13.2