How obtain the embeddings of a cluster shown in the UMAP figure?

lmcinnes / umap

Uniform Manifold Approximation and Projection

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How obtain the embeddings of a cluster shown in the UMAP figure? #787

Open myrainbowandsky opened 3 years ago

lmcinnes commented 3 years ago

If you want to isolate a cluster you'll need to run a clustering algorithm over the embedding and use the results of that. Personally I recommend HDBSCAN, but there are a variety of clustering algorithms you could try.