I saw another post related to this error where the solution was in Edit -> Settings -> Receptor preprocessing tab. However, on MacOS, the edit tab does not have a Settings panel, nor does any of the other panels. Attached is a screenshot. Is there a workaround to this?
Here is the error:
Traceback (most recent call last):
File "MolKit/hydrogenBuilder.py", line 65, in addHydrogens
File "MolKit/molecule.py", line 102, in getattr
File "MolKit/tree.py", line 496, in getattr
File "MolKit/listSet.py", line 170, in getattr
File "MolKit/molecule.py", line 366, in getattr
AttributeError: member babel_type not found
During handling of the above exception, another exception occurred:
Traceback (most recent call last):
File "process.py", line 318, in run
File "process.py", line 335, in do
File "process.py", line 279, in prepare_receptor
File "prepare.py", line 204, in prepare_autodock_receptor
File "AutoDockTools/MoleculePreparation.py", line 570, in init
File "AutoDockTools/MoleculePreparation.py", line 140, in init
File "AutoDockTools/MoleculePreparation.py", line 190, in repairMol
File "AutoDockTools/MoleculePreparation.py", line 203, in addHydrogens
File "MolKit/hydrogenBuilder.py", line 69, in addHydrogens
File "PyBabel/atomTypes.py", line 141, in assignHybridization
File "PyBabel/atomTypes.py", line 294, in valence_two
File "PyBabel/util.py", line 55, in bond_angle
ZeroDivisionError: ('Input used:', [-33.236, 47.639, 26.683], [-33.236, 47.639, 26.683], [-33.236, 47.639, [26.683])
I saw another post related to this error where the solution was in Edit -> Settings -> Receptor preprocessing tab. However, on MacOS, the edit tab does not have a Settings panel, nor does any of the other panels. Attached is a screenshot. Is there a workaround to this?
Here is the error:
Traceback (most recent call last): File "MolKit/hydrogenBuilder.py", line 65, in addHydrogens File "MolKit/molecule.py", line 102, in getattr File "MolKit/tree.py", line 496, in getattr File "MolKit/listSet.py", line 170, in getattr File "MolKit/molecule.py", line 366, in getattr AttributeError: member babel_type not found
During handling of the above exception, another exception occurred:
Traceback (most recent call last): File "process.py", line 318, in run File "process.py", line 335, in do File "process.py", line 279, in prepare_receptor File "prepare.py", line 204, in prepare_autodock_receptor File "AutoDockTools/MoleculePreparation.py", line 570, in init File "AutoDockTools/MoleculePreparation.py", line 140, in init File "AutoDockTools/MoleculePreparation.py", line 190, in repairMol File "AutoDockTools/MoleculePreparation.py", line 203, in addHydrogens File "MolKit/hydrogenBuilder.py", line 69, in addHydrogens File "PyBabel/atomTypes.py", line 141, in assignHybridization File "PyBabel/atomTypes.py", line 294, in valence_two File "PyBabel/util.py", line 55, in bond_angle ZeroDivisionError: ('Input used:', [-33.236, 47.639, 26.683], [-33.236, 47.639, 26.683], [-33.236, 47.639, [26.683])