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lmdu / krait

An ultrafast tool for genome-wide survey of microsatellites and primer design
http://krait.biosv.com
GNU Affero General Public License v3.0
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Filtering out Microsatellites for which Primers weren't generated #1

Closed Alaneus closed 6 years ago

Alaneus commented 6 years ago

I'm using Krait to design primers for whole genomes. The genome sequences are present in scaffolds. Thus, if a microsatellite is present at the start or end of scaffold, the primer designing fails. I wish to filter out these failed microsatellites so as to combine microsatellite list and primer list. Deleting all the failed microsatellites manually is too much of a chore.

lmdu commented 6 years ago

I am sorry for the inconvenience. This version can not filter out microsatellites without primers. In the future version, we will add supporting for direct export microsatellites with designed primers.

Alaneus commented 6 years ago

Thank you.

Dalini1299 commented 1 year ago

I am using KRAIT tool for mining microsatellites from the transcriptome data. Its working good, but when I try to design primers it is showing error. How to overcome with this issue. Please help me to sort out this problem.