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lmdu / pyfastx

a python package for fast random access to sequences from plain and gzipped FASTA/Q files
https://pyfastx.readthedocs.io
MIT License
262 stars 23 forks source link

performance update kseq #68

Closed telatin closed 1 year ago

telatin commented 1 year ago

as in https://github.com/lh3/seqtk/pull/123

Tested on fasta files speedup from 3.887 s ± 0.099 s to 3.408 s ± 0.119 s

lmdu commented 1 year ago

Thanks!