Test failure on ppc64el

[tillea]

Description

The Debian auto-builders on ppc64el architecture were running into an error with Python3.9. This is reported in a bug report.

Error message:

=================================== FAILURES ===================================
_________________ TestUserDefiniedModel.test_model_nan_policy __________________

self = <test_model.TestUserDefiniedModel testMethod=test_model_nan_policy>

    def test_model_nan_policy(self):
        """Tests for nan_policy with NaN values in the input data."""
...
        result = mod.fit(y, params, x=x, nan_policy='propagate')
>       self.assertTrue(result.success)
E       AssertionError: False is not true

tests/test_model.py:647: AssertionError
=============================== warnings summary ===============================
.pybuild/cpython3_3.9_lmfit/build/tests/test_lineshapes.py::test_no_ZeroDivisionError_and_finite_output[logistic]
  /<<PKGBUILDDIR>>/.pybuild/cpython3_3.9_lmfit/build/lmfit/lineshapes.py:184: RuntimeWarning: overflow encountered in exp
    return amplitude*(1. - 1./(1. + exp((x-center)/max(tiny, sigma))))

.pybuild/cpython3_3.9_lmfit/build/tests/test_lineshapes.py::test_no_ZeroDivisionError_and_finite_output[thermal_distribution]
  /<<PKGBUILDDIR>>/.pybuild/cpython3_3.9_lmfit/build/lmfit/lineshapes.py:344: RuntimeWarning: divide by zero encountered in true_divide
    return real(1/(amplitude*exp((x - center)/kt) + offset + tiny*1j))

.pybuild/cpython3_3.9_lmfit/build/tests/test_lineshapes.py::test_x_float_value[step]
.pybuild/cpython3_3.9_lmfit/build/tests/test_lineshapes.py::test_x_float_value[rectangle]
  <__array_function__ internals>:5: DeprecationWarning: Calling nonzero on 0d arrays is deprecated, as it behaves surprisingly. Use `atleast_1d(cond).nonzero()` if the old behavior was   intended. If the context of this warning is of the form `arr[nonzero(cond)]`, just use `arr[cond]`.

.pybuild/cpython3_3.9_lmfit/build/tests/test_nose.py::CommonMinimizerTest::test_diffev_bounds_check
  /<<PKGBUILDDIR>>/.pybuild/cpython3_3.9_lmfit/build/lmfit/minimizer.py:933: RuntimeWarning: ignoring `maxiter` argument to `scalar_minimize()`. Use `max_nfev` instead.
    warnings.warn(MAXEVAL_Warning % ('maxiter', thisfuncname()),

-- Docs: https://docs.pytest.org/en/latest/warnings.html
=== 1 failed, 508 passed, 13 skipped, 3 xfailed, 5 warnings in 98.68 seconds ===

Version information

Python: 3.9.1 (default, Dec  8 2020, 07:51:42) 
[GCC 10.2.0]

lmfit: 1.0.1, scipy: 1.5.4, numpy: 1.19.4, asteval: 0.9.19, uncertainties: 3.1.4

Kind regards, Andreas.

[newville]

This is a duplicate of #686. Personally, I could not care less about supporting PPC and have no intention of doing any work toward that. It's okay with me if someone else works on that, and It's okay with me if no one does. I guess I'm willing to leave this open to avoid another duplicate issue.

[picca]

Hello, the bad news is that I have also this error on the i386 platform.

Running with gitlab-runner 13.7.0 (HEAD)
  on salsa-runner.debian.net f0fdd533
section_start:1610009407:prepare_executor
Preparing the "docker+machine" executor
Using Docker executor with image registry.salsa.debian.org/salsa-ci-team/pipeline/i386/base:unstable ...
WARNING: Pulling GitLab Runner helper image from Docker Hub. Helper image is migrating to registry.gitlab.com, for more information see https://docs.gitlab.com/runner/configuration/advanced-configuration.html#migrating-helper-image-to-registrygitlabcom
Pulling docker image gitlab/gitlab-runner-helper:x86_64-latest ...
Using docker image sha256:bab187236b3bbcefe6211970f695c37a74dbe2d9915a7cdbd554683e408539ca for gitlab/gitlab-runner-helper:x86_64-latest with digest gitlab/gitlab-runner-helper@sha256:c276d4be3e859594276b70a195d2431dd8e18a164452139dd1599779de2ff4e5 ...
Authenticating with credentials from job payload (GitLab Registry)
Pulling docker image registry.salsa.debian.org/salsa-ci-team/pipeline/i386/base:unstable ...
Using docker image sha256:a592060edcb2207b71fe51c4d4b20be19e337e9467500239cdda6e723c02cc5e for registry.salsa.debian.org/salsa-ci-team/pipeline/i386/base:unstable with digest registry.salsa.debian.org/salsa-ci-team/pipeline/i386/base@sha256:c4ab79ccf0a8847e9dc900ed2915e36af64b6cdf2e7955632a252abef46d5e4a ...
section_end:1610009463:prepare_executor
section_start:1610009463:prepare_script
Preparing environment
Running on runner-f0fdd533-project-3452-concurrent-0 via runner-f0fdd533-1610009407-fdb79088...
section_end:1610009465:prepare_script
section_start:1610009465:get_sources
Getting source from Git repository
Fetching changes with git depth set to 1...
Initialized empty Git repository in /builds/science-team/lmfit-py/.git/
Created fresh repository.
Checking out 52fe9fdd as master...

Skipping Git submodules setup
section_end:1610009466:get_sources
section_start:1610009466:restore_cache
Restoring cache
Checking cache for build-i386...
FATAL: file does not exist                         
Failed to extract cache
section_end:1610009467:restore_cache
section_start:1610009467:download_artifacts
Downloading artifacts
Downloading artifacts for extract-source (1320557)...
Downloading artifacts from coordinator... ok        id=1320557 responseStatus=200 OK token=_zTTcoL9
section_end:1610009468:download_artifacts
section_start:1610009468:step_script
Executing "step_script" stage of the job script
$ # Reported in https://salsa.debian.org/salsa-ci-team/pipeline/issues/104, # collapsed multi-line command
+ [[ -n '' ]]
$ export CCACHE_DIR=${CCACHE_TMP_DIR} # collapsed multi-line command
Get:1 http://deb.debian.org/debian sid InRelease [153 kB]
Get:2 http://deb.debian.org/debian sid/main Sources [9102 kB]
Get:3 http://deb.debian.org/debian sid/main i386 Packages [8497 kB]
Fetched 17.8 MB in 3s (7011 kB/s)
Reading package lists...
Reading package lists...
Building dependency tree...
The following additional packages will be installed:
  aptitude-common autoconf automake autopoint autotools-dev binutils
  binutils-common binutils-i686-linux-gnu bsdextrautils bzip2 ca-certificates
  cpp cpp-10 debhelper dh-autoreconf dh-strip-nondeterminism dirmngr dpkg-dev
  dwz fakeroot file g++ g++-10 gcc gcc-10 gcc-10-base gettext gettext-base
  gnupg gnupg-l10n gnupg-utils gpg gpg-agent gpg-wks-client gpg-wks-server
  gpgconf gpgsm groff-base intltool-debian libarchive-zip-perl libasan6
  libassuan0 libatomic1 libb-hooks-op-check-perl libbinutils
  libboost-iostreams1.74.0 libc-dev-bin libc6 libc6-dev libcc1-0
  libclass-method-modifiers-perl libcrypt-dev libctf-nobfd0 libctf0
  libcwidget4 libdebhelper-perl libdevel-callchecker-perl libdpkg-perl
  libdynaloader-functions-perl libencode-locale-perl libexpat1 libfakeroot
  libfile-dirlist-perl libfile-homedir-perl libfile-listing-perl
  libfile-stripnondeterminism-perl libfile-touch-perl libfile-which-perl
  libgcc-10-dev libgcc-s1 libgdbm-compat4 libgdbm6 libgomp1 libgssapi-krb5-2
  libhtml-parser-perl libhtml-tagset-perl libhtml-tree-perl
  libhttp-cookies-perl libhttp-date-perl libhttp-message-perl
  libhttp-negotiate-perl libicu67 libimport-into-perl libio-html-perl
  libio-pty-perl libio-socket-ssl-perl libipc-run-perl libisl23 libitm1
  libk5crypto3 libkeyutils1 libkrb5-3 libkrb5support0 libksba8 libldap-2.4-2
  liblwp-mediatypes-perl liblwp-protocol-https-perl libmagic-mgc libmagic1
  libmodule-runtime-perl libmoo-perl libmpc3 libmpfr6 libncursesw6
  libnet-http-perl libnet-ssleay-perl libnpth0 libnsl-dev libnsl2
  libparams-classify-perl libperl5.32 libpipeline1 libpython3-stdlib
  libpython3.9-minimal libpython3.9-stdlib libquadmath0 libreadline8
  librole-tiny-perl libsasl2-2 libsasl2-modules-db libsigc++-2.0-0v5
  libsigsegv2 libsqlite3-0 libssl1.1 libstdc++-10-dev libstdc++6
  libstrictures-perl libsub-override-perl libsub-quote-perl libtimedate-perl
  libtinfo6 libtirpc-common libtirpc-dev libtirpc3 libtool libtry-tiny-perl
  libubsan1 libuchardet0 liburi-perl libwww-perl libwww-robotrules-perl
  libxapian30 libxml2 linux-libc-dev m4 mailcap make man-db media-types
  mime-support netbase openssl patch patchutils perl perl-base
  perl-modules-5.32 perl-openssl-defaults pinentry-curses po-debconf python3
  python3-minimal python3.9 python3.9-minimal readline-common sensible-utils
  wdiff xz-utils
Suggested packages:
  apt-xapian-index aptitude-doc-en | aptitude-doc debtags tasksel
  autoconf-archive gnu-standards autoconf-doc binutils-doc bzip2-doc distcc
  | icecc cpp-doc gcc-10-locales dh-make adequate at autopkgtest
  bls-standalone bsd-mailx | mailx check-all-the-things cvs-buildpackage
  devscripts-el diffoscope disorderfs dose-extra duck faketime gnuplot
  how-can-i-help libauthen-sasl-perl libdbd-pg-perl libfile-desktopentry-perl
  libnet-smtps-perl libterm-size-perl libyaml-syck-perl mmdebstrap
  mozilla-devscripts mutt piuparts postgresql-client quilt ratt reprotest
  ssh-client svn-buildpackage w3m dbus-user-session libpam-systemd
  pinentry-gnome3 tor debian-keyring g++-multilib g++-10-multilib gcc-10-doc
  gcc-multilib manpages-dev flex bison gdb gcc-doc gcc-10-multilib gettext-doc
  libasprintf-dev libgettextpo-dev parcimonie xloadimage scdaemon groff
  glibc-doc libc-l10n locales libcwidget-dev git bzr gdbm-l10n krb5-doc
  krb5-user libdata-dump-perl libcrypt-ssleay-perl libscalar-number-perl
  libstdc++-10-doc libbareword-filehandles-perl libindirect-perl
  libmultidimensional-perl libtool-doc gfortran | fortran95-compiler gcj-jdk
  libauthen-ntlm-perl xapian-tools m4-doc make-doc apparmor less www-browser
  ed diffutils-doc perl-doc libterm-readline-gnu-perl
  | libterm-readline-perl-perl libtap-harness-archive-perl pinentry-doc
  libmail-box-perl python3-doc python3-tk python3-venv python3.9-venv
  python3.9-doc binfmt-support readline-doc wdiff-doc
Recommended packages:
  dctrl-tools dput | dupload libdistro-info-perl libgit-wrapper-perl
  libgitlab-api-v4-perl liblist-compare-perl libstring-shellquote-perl
  licensecheck lintian pristine-tar python3-apt python3-debian python3-magic
  python3-requests python3-unidiff python3-xdg strace unzip wget | curl
  debian-keyring libsoap-lite-perl libalgorithm-merge-perl curl | wget | lynx
  manpages manpages-dev libc-devtools libnss-nis libnss-nisplus
  libfile-fcntllock-perl liblocale-gettext-perl libarchive-cpio-perl
  libhtml-format-perl libclone-perl krb5-locales libldap-common
  libclass-xsaccessor-perl libnamespace-clean-perl libsub-name-perl libgpm2
  libsasl2-modules libltdl-dev libdata-dump-perl libhtml-form-perl
  libhttp-daemon-perl libmailtools-perl libmail-sendmail-perl
The following NEW packages will be installed:
  aptitude aptitude-common autoconf automake autopoint autotools-dev binutils
  binutils-common binutils-i686-linux-gnu bsdextrautils build-essential bzip2
  ca-certificates ccache cpp cpp-10 debhelper devscripts dh-autoreconf
  dh-strip-nondeterminism dirmngr dpkg-dev dwz equivs fakeroot file g++ g++-10
  gcc gcc-10 gettext gettext-base gnupg gnupg-l10n gnupg-utils gpg gpg-agent
  gpg-wks-client gpg-wks-server gpgconf gpgsm groff-base intltool-debian
  libarchive-zip-perl libasan6 libassuan0 libatomic1 libb-hooks-op-check-perl
  libbinutils libboost-iostreams1.74.0 libc-dev-bin libc6-dev libcc1-0
  libclass-method-modifiers-perl libcrypt-dev libctf-nobfd0 libctf0
  libcwidget4 libdebhelper-perl libdevel-callchecker-perl libdpkg-perl
  libdynaloader-functions-perl libencode-locale-perl libexpat1 libfakeroot
  libfile-dirlist-perl libfile-homedir-perl libfile-listing-perl
  libfile-stripnondeterminism-perl libfile-touch-perl libfile-which-perl
  libgcc-10-dev libgdbm-compat4 libgdbm6 libgomp1 libgssapi-krb5-2
  libhtml-parser-perl libhtml-tagset-perl libhtml-tree-perl
  libhttp-cookies-perl libhttp-date-perl libhttp-message-perl
  libhttp-negotiate-perl libicu67 libimport-into-perl libio-html-perl
  libio-pty-perl libio-socket-ssl-perl libipc-run-perl libisl23 libitm1
  libk5crypto3 libkeyutils1 libkrb5-3 libkrb5support0 libksba8 libldap-2.4-2
  liblwp-mediatypes-perl liblwp-protocol-https-perl libmagic-mgc libmagic1
  libmodule-runtime-perl libmoo-perl libmpc3 libmpfr6 libncursesw6
  libnet-http-perl libnet-ssleay-perl libnpth0 libnsl-dev libnsl2
  libparams-classify-perl libperl5.32 libpipeline1 libpython3-stdlib
  libpython3.9-minimal libpython3.9-stdlib libquadmath0 libreadline8
  librole-tiny-perl libsasl2-2 libsasl2-modules-db libsigc++-2.0-0v5
  libsigsegv2 libsqlite3-0 libssl1.1 libstdc++-10-dev libstrictures-perl
  libsub-override-perl libsub-quote-perl libtimedate-perl libtirpc-common
  libtirpc-dev libtirpc3 libtool libtry-tiny-perl libubsan1 libuchardet0
  liburi-perl libwww-perl libwww-robotrules-perl libxapian30 libxml2
  linux-libc-dev m4 mailcap make man-db media-types mime-support netbase
  openssl patch patchutils perl perl-modules-5.32 perl-openssl-defaults
  pinentry-curses po-debconf python3 python3-minimal python3.9
  python3.9-minimal readline-common sensible-utils wdiff xz-utils
The following packages will be upgraded:
  gcc-10-base libc6 libgcc-s1 libstdc++6 libtinfo6 perl-base
6 upgraded, 167 newly installed, 0 to remove and 37 not upgraded.
Need to get 120 MB of archives.
After this operation, 415 MB of additional disk space will be used.
Get:1 http://deb.debian.org/debian sid/main i386 perl-base i386 5.32.0-6 [1721 kB]
Get:2 http://deb.debian.org/debian sid/main i386 bsdextrautils i386 2.36.1-4 [148 kB]
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Get:24 http://deb.debian.org/debian sid/main i386 libtinfo6 i386 6.2+20201114-2 [342 kB]
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Get:26 http://deb.debian.org/debian sid/main i386 libkrb5support0 i386 1.18.3-4 [68.3 kB]
Get:27 http://deb.debian.org/debian sid/main i386 libk5crypto3 i386 1.18.3-4 [117 kB]
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Get:31 http://deb.debian.org/debian sid/main i386 libtirpc-common all 1.3.1-1 [13.4 kB]
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Get:33 http://deb.debian.org/debian sid/main i386 libnsl2 i386 1.3.0-2 [42.2 kB]
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Get:37 http://deb.debian.org/debian sid/main i386 libpython3.9-stdlib i386 3.9.1-1 [1755 kB]
Get:38 http://deb.debian.org/debian sid/main i386 python3.9 i386 3.9.1-1 [461 kB]
Get:39 http://deb.debian.org/debian sid/main i386 libpython3-stdlib i386 3.9.1-1 [21.0 kB]
Get:40 http://deb.debian.org/debian sid/main i386 python3 i386 3.9.1-1 [64.1 kB]
Get:41 http://deb.debian.org/debian sid/main i386 netbase all 6.2 [19.9 kB]
Get:42 http://deb.debian.org/debian sid/main i386 sensible-utils all 0.0.12+nmu1 [16.0 kB]
Get:43 http://deb.debian.org/debian sid/main i386 bzip2 i386 1.0.8-4 [50.0 kB]
Get:44 http://deb.debian.org/debian sid/main i386 libmagic-mgc i386 1:5.39-3 [273 kB]
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Get:59 http://deb.debian.org/debian sid/main i386 automake all 1:1.16.3-2 [814 kB]
Get:60 http://deb.debian.org/debian sid/main i386 autopoint all 0.21-3 [509 kB]
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Get:67 http://deb.debian.org/debian sid/main i386 libc-dev-bin i386 2.31-9 [278 kB]
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Get:69 http://deb.debian.org/debian sid/main i386 libcrypt-dev i386 1:4.4.17-1 [116 kB]
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Get:72 http://deb.debian.org/debian sid/main i386 libc6-dev i386 2.31-9 [3774 kB]
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Get:88 http://deb.debian.org/debian sid/main i386 libstdc++-10-dev i386 10.2.1-3 [1785 kB]
Get:89 http://deb.debian.org/debian sid/main i386 g++-10 i386 10.2.1-3 [9838 kB]
Get:90 http://deb.debian.org/debian sid/main i386 g++ i386 4:10.2.0-1 [1648 B]
Get:91 http://deb.debian.org/debian sid/main i386 make i386 4.3-4 [404 kB]
Get:92 http://deb.debian.org/debian sid/main i386 libdpkg-perl all 1.20.5 [1473 kB]
Get:93 http://deb.debian.org/debian sid/main i386 patch i386 2.7.6-6 [140 kB]
Get:94 http://deb.debian.org/debian sid/main i386 dpkg-dev all 1.20.5 [1909 kB]
Get:95 http://deb.debian.org/debian sid/main i386 build-essential i386 12.9 [7704 B]
Get:96 http://deb.debian.org/debian sid/main i386 openssl i386 1.1.1i-1 [859 kB]
Get:97 http://deb.debian.org/debian sid/main i386 ca-certificates all 20200601 [158 kB]
Get:98 http://deb.debian.org/debian sid/main i386 ccache i386 4.1-1 [480 kB]
Get:99 http://deb.debian.org/debian sid/main i386 libtool all 2.4.6-14 [513 kB]
Get:100 http://deb.debian.org/debian sid/main i386 dh-autoreconf all 19 [16.9 kB]
Get:101 http://deb.debian.org/debian sid/main i386 libdebhelper-perl all 13.3.1 [188 kB]
Get:102 http://deb.debian.org/debian sid/main i386 libarchive-zip-perl all 1.68-1 [104 kB]
Get:103 http://deb.debian.org/debian sid/main i386 libsub-override-perl all 0.09-2 [10.2 kB]
Get:104 http://deb.debian.org/debian sid/main i386 libfile-stripnondeterminism-perl all 1.9.0-1 [25.5 kB]
Get:105 http://deb.debian.org/debian sid/main i386 dh-strip-nondeterminism all 1.9.0-1 [15.2 kB]
Get:106 http://deb.debian.org/debian sid/main i386 dwz i386 0.13+20201015-2 [176 kB]
Get:107 http://deb.debian.org/debian sid/main i386 libicu67 i386 67.1-5 [8774 kB]
Get:108 http://deb.debian.org/debian sid/main i386 libxml2 i386 2.9.10+dfsg-6.3+b1 [727 kB]
Get:109 http://deb.debian.org/debian sid/main i386 gettext i386 0.21-3 [1321 kB]
Get:110 http://deb.debian.org/debian sid/main i386 intltool-debian all 0.35.0+20060710.5 [26.8 kB]
Get:111 http://deb.debian.org/debian sid/main i386 po-debconf all 1.0.21+nmu1 [248 kB]
Get:112 http://deb.debian.org/debian sid/main i386 debhelper all 13.3.1 [1010 kB]
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Get:138 http://deb.debian.org/debian sid/main i386 libclass-method-modifiers-perl all 2.13-1 [19.2 kB]
Get:139 http://deb.debian.org/debian sid/main i386 libb-hooks-op-check-perl i386 0.22-1+b3 [11.4 kB]
Get:140 http://deb.debian.org/debian sid/main i386 libdynaloader-functions-perl all 0.003-1.1 [12.7 kB]
Get:141 http://deb.debian.org/debian sid/main i386 libdevel-callchecker-perl i386 0.008-1+b2 [15.9 kB]
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Get:143 http://deb.debian.org/debian sid/main i386 libmodule-runtime-perl all 0.016-1 [19.4 kB]
Get:144 http://deb.debian.org/debian sid/main i386 libimport-into-perl all 1.002005-1 [11.6 kB]
Get:145 http://deb.debian.org/debian sid/main i386 librole-tiny-perl all 2.001004-1 [20.8 kB]
Get:146 http://deb.debian.org/debian sid/main i386 libstrictures-perl all 2.000006-1 [18.6 kB]
Get:147 http://deb.debian.org/debian sid/main i386 libsub-quote-perl all 2.006006-1 [21.0 kB]
Get:148 http://deb.debian.org/debian sid/main i386 libmoo-perl all 2.004004-1 [59.9 kB]
Get:149 http://deb.debian.org/debian sid/main i386 libencode-locale-perl all 1.05-1.1 [13.2 kB]
Get:150 http://deb.debian.org/debian sid/main i386 libtimedate-perl all 2.3300-1 [39.2 kB]
Get:151 http://deb.debian.org/debian sid/main i386 libhttp-date-perl all 6.05-1 [10.4 kB]
Get:152 http://deb.debian.org/debian sid/main i386 libfile-listing-perl all 6.14-1 [12.4 kB]
Get:153 http://deb.debian.org/debian sid/main i386 libhtml-tagset-perl all 3.20-4 [13.0 kB]
Get:154 http://deb.debian.org/debian sid/main i386 liburi-perl all 5.05-1 [90.3 kB]
Get:155 http://deb.debian.org/debian sid/main i386 libhtml-parser-perl i386 3.75-1+b1 [106 kB]
Get:156 http://deb.debian.org/debian sid/main i386 libhtml-tree-perl all 5.07-2 [213 kB]
Get:157 http://deb.debian.org/debian sid/main i386 libio-html-perl all 1.001-1.1 [18.6 kB]
Get:158 http://deb.debian.org/debian sid/main i386 liblwp-mediatypes-perl all 6.04-1 [19.9 kB]
Get:159 http://deb.debian.org/debian sid/main i386 libhttp-message-perl all 6.27-1 [79.5 kB]
Get:160 http://deb.debian.org/debian sid/main i386 libhttp-cookies-perl all 6.10-1 [19.6 kB]
Get:161 http://deb.debian.org/debian sid/main i386 libhttp-negotiate-perl all 6.01-1 [12.8 kB]
Get:162 http://deb.debian.org/debian sid/main i386 perl-openssl-defaults i386 5 [7360 B]
Get:163 http://deb.debian.org/debian sid/main i386 libnet-ssleay-perl i386 1.88-3+b1 [328 kB]
Get:164 http://deb.debian.org/debian sid/main i386 libio-socket-ssl-perl all 2.068-1 [215 kB]
Get:165 http://deb.debian.org/debian sid/main i386 libnet-http-perl all 6.19-1 [24.8 kB]
Get:166 http://deb.debian.org/debian sid/main i386 liblwp-protocol-https-perl all 6.10-1 [12.2 kB]
Get:167 http://deb.debian.org/debian sid/main i386 libtry-tiny-perl all 0.30-1 [23.3 kB]
Get:168 http://deb.debian.org/debian sid/main i386 libwww-robotrules-perl all 6.02-1 [12.9 kB]
Get:169 http://deb.debian.org/debian sid/main i386 libwww-perl all 6.51-1 [192 kB]
Get:170 http://deb.debian.org/debian sid/main i386 patchutils i386 0.4.2-1 [79.6 kB]
Get:171 http://deb.debian.org/debian sid/main i386 wdiff i386 1.2.2-2+b1 [123 kB]
Get:172 http://deb.debian.org/debian sid/main i386 devscripts i386 2.20.5 [1084 kB]
Get:173 http://deb.debian.org/debian sid/main i386 equivs all 2.3.1 [22.7 kB]
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update-alternatives: using /usr/bin/write.ul to provide /usr/bin/write (write) in auto mode
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Setting up libsqlite3-0:i386 (3.34.0-1) ...
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Updating symlinks in /usr/lib/ccache ...
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Setting up libmagic1:i386 (1:5.39-3) ...
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Setting up libfakeroot:i386 (1.25.3-1.1) ...
Setting up libasan6:i386 (10.2.1-3) ...
Setting up libkrb5support0:i386 (1.18.3-4) ...
Setting up libsasl2-modules-db:i386 (2.1.27+dfsg-2) ...
Setting up fakeroot (1.25.3-1.1) ...
update-alternatives: using /usr/bin/fakeroot-sysv to provide /usr/bin/fakeroot (fakeroot) in auto mode
Setting up autotools-dev (20180224.1+nmu1) ...
Setting up make (4.3-4) ...
Setting up libmpfr6:i386 (4.1.0-3) ...
Setting up gnupg-l10n (2.2.20-1) ...
Setting up libsigc++-2.0-0v5:i386 (2.10.4-2) ...
Setting up aptitude-common (0.8.13-2) ...
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Setting up xz-utils (5.2.5-1.0) ...
update-alternatives: using /usr/bin/xz to provide /usr/bin/lzma (lzma) in auto mode
Setting up libquadmath0:i386 (10.2.1-3) ...
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Setting up libk5crypto3:i386 (1.18.3-4) ...
Setting up libsasl2-2:i386 (2.1.27+dfsg-2) ...
Setting up libubsan1:i386 (10.2.1-3) ...
Setting up dwz (0.13+20201015-2) ...
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Setting up libcrypt-dev:i386 (1:4.4.17-1) ...
Setting up libuchardet0:i386 (0.0.7-1) ...
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Setting up libkrb5-3:i386 (1.18.3-4) ...
Setting up libbinutils:i386 (2.35.1-7) ...
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Setting up libctf0:i386 (2.35.1-7) ...
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Setting up binutils-i686-linux-gnu (2.35.1-7) ...
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Setting up libldap-2.4-2:i386 (2.4.56+dfsg-1) ...
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Setting up binutils (2.35.1-7) ...
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Updating certificates in /etc/ssl/certs...
126 added, 0 removed; done.
Setting up libcwidget4:i386 (0.5.18-5) ...
Setting up libgssapi-krb5-2:i386 (1.18.3-4) ...
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Setting up gcc-10 (10.2.1-3) ...
Setting up aptitude (0.8.13-2+b1) ...
update-alternatives: using /usr/bin/aptitude-curses to provide /usr/bin/aptitude (aptitude) in auto mode
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update-alternatives: using /usr/bin/automake-1.16 to provide /usr/bin/automake (automake) in auto mode
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Setting up gpg-wks-client (2.2.20-1) ...
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Setting up libclass-method-modifiers-perl (2.13-1) ...
Setting up libio-pty-perl (1:1.15-2) ...
Setting up libarchive-zip-perl (1.68-1) ...
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Setting up libdebhelper-perl (13.3.1) ...
Setting up liblwp-mediatypes-perl (6.04-1) ...
Setting up libtry-tiny-perl (0.30-1) ...
Setting up libnet-http-perl (6.19-1) ...
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Setting up libdevel-callchecker-perl (0.008-1+b2) ...
Setting up dpkg-dev (1.20.5) ...
Setting up intltool-debian (0.35.0+20060710.5) ...
Setting up patchutils (0.4.2-1) ...
Setting up libipc-run-perl (20200505.0-1) ...
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Setting up libnsl-dev:i386 (1.3.0-2) ...
Setting up libhtml-parser-perl (3.75-1+b1) ...
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Setting up g++-10 (10.2.1-3) ...
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Setting up po-debconf (1.0.21+nmu1) ...
Setting up libhtml-tree-perl (5.07-2) ...
Setting up libparams-classify-perl (0.015-1+b3) ...
Setting up python3 (3.9.1-1) ...
Setting up libmodule-runtime-perl (0.016-1) ...
Setting up dh-strip-nondeterminism (1.9.0-1) ...
Setting up g++ (4:10.2.0-1) ...
update-alternatives: using /usr/bin/g++ to provide /usr/bin/c++ (c++) in auto mode
Setting up build-essential (12.9) ...
Setting up libimport-into-perl (1.002005-1) ...
Setting up libmoo-perl (2.004004-1) ...
Setting up liblwp-protocol-https-perl (6.10-1) ...
Setting up libwww-perl (6.51-1) ...
Setting up dh-autoreconf (19) ...
Setting up devscripts (2.20.5) ...
Setting up debhelper (13.3.1) ...
Setting up equivs (2.3.1) ...
Processing triggers for libc-bin (2.31-5) ...
Processing triggers for ca-certificates (20200601) ...
Updating certificates in /etc/ssl/certs...
0 added, 0 removed; done.
Running hooks in /etc/ca-certificates/update.d...
done.
 -> Starting installing the build-deps
dpkg-buildpackage: info: source package lmfit-py-build-deps
dpkg-buildpackage: info: source version 1.0.1-4
dpkg-buildpackage: info: source distribution unstable
dpkg-buildpackage: info: source changed by Salsa Pipeline <salsa-pipeline@debian.org>
dpkg-buildpackage: info: host architecture i386
 dpkg-source --before-build .
 debian/rules clean
dh clean
   dh_clean
 debian/rules binary
dh binary
   dh_update_autotools_config
   dh_autoreconf
   create-stamp debian/debhelper-build-stamp
   dh_prep
   dh_install
   dh_installdocs
   dh_installchangelogs
   dh_perl
   dh_link
   dh_strip_nondeterminism
   dh_compress
   dh_fixperms
   dh_missing
   dh_installdeb
   dh_gencontrol
   dh_md5sums
   dh_builddeb
dpkg-deb: building package 'lmfit-py-build-deps' in '../lmfit-py-build-deps_1.0.1-4_all.deb'.
 dpkg-genbuildinfo --build=binary
 dpkg-genchanges --build=binary >../lmfit-py-build-deps_1.0.1-4_i386.changes
dpkg-genchanges: info: binary-only upload (no source code included)
 dpkg-source --after-build .
dpkg-buildpackage: info: binary-only upload (no source included)

The package has been created.
Attention, the package has been created in the /tmp/build-deps directory,
not in ".." as indicated by the message above!
Selecting previously unselected package lmfit-py-build-deps.
(Reading database ... 17425 files and directories currently installed.)
Preparing to unpack .../lmfit-py-build-deps_1.0.1-4_all.deb ...
Unpacking lmfit-py-build-deps (1.0.1-4) ...
Setting up lmfit-py-build-deps (1.0.1-4) ...
dpkg: lmfit-py-build-deps: dependency problems, but configuring anyway as you requested:
 lmfit-py-build-deps depends on dh-python; however:
  Package dh-python is not installed.
 lmfit-py-build-deps depends on python3-all; however:
  Package python3-all is not installed.
 lmfit-py-build-deps depends on python3-asteval (>= 0.9.16); however:
  Package python3-asteval is not installed.
 lmfit-py-build-deps depends on python3-ipython; however:
  Package python3-ipython is not installed.
 lmfit-py-build-deps depends on python3-numpy; however:
  Package python3-numpy is not installed.
 lmfit-py-build-deps depends on python3-pandas; however:
  Package python3-pandas is not installed.
 lmfit-py-build-deps depends on python3-pytest; however:
  Package python3-pytest is not installed.
 lmfit-py-build-deps depends on python3-scipy; however:
  Package python3-scipy is not installed.
 lmfit-py-build-deps depends on python3-setuptools; however:
  Package python3-setuptools is not installed.
 lmfit-py-build-deps depends on python3-sphinx; however:
  Package python3-sphinx is not installed.
 lmfit-py-build-deps depends on python3-sphinx-gallery; however:
  Package python3-sphinx-gallery is not installed.
 lmfit-py-build-deps depends on python3-uncertainties (>= 3.0.2.github~); however:
  Package python3-uncertainties is not installed.

Reading package lists...
Building dependency tree...
Reading state information...
Initializing package states...
Writing extended state information...
Building tag database...
lmfit-py-build-deps is already installed at the requested version (1.0.1-4)
lmfit-py-build-deps is already installed at the requested version (1.0.1-4)
The following NEW packages will be installed:
  dh-python{a} docutils-common{a} fonts-lyx{a} libblas3{a} libbrotli1{a} libdeflate0{a} libfreetype6{a} libgfortran5{a} libimagequant0{a} libjbig0{a} libjpeg62-turbo{a} libjs-jquery{a} libjs-jquery-ui{a} libjs-sphinxdoc{a} libjs-underscore{a} liblapack3{a} liblbfgsb0{a} liblcms2-2{a} libpng16-16{a} libtiff5{a} libwebp6{a} libwebpdemux2{a} libwebpmux3{a} libxau6{a} libxcb1{a} libxdmcp6{a} python-babel-localedata{a} python-matplotlib-data{a} python3-alabaster{a} python3-all{a} python3-asteval{a} python3-attr{a} python3-babel{a} python3-backcall{a} python3-certifi{a} python3-chardet{a} python3-cycler{a} python3-dateutil{a} python3-decorator{a} python3-distutils{a} python3-docutils{a} python3-future{a} python3-idna{a} python3-imagesize{a} python3-importlib-metadata{a} python3-iniconfig{a} python3-ipython{a} python3-ipython-genutils{a} python3-jedi{a} python3-jinja2{a} python3-kiwisolver{a} python3-lib2to3{a} python3-markupsafe{a} python3-matplotlib{a} python3-more-itertools{a} python3-numpy{a} python3-packaging{a} python3-pandas{a} python3-pandas-lib{a} python3-parso{a} python3-pexpect{a} python3-pickleshare{a} python3-pil{a} python3-pkg-resources{a} python3-pluggy{a} python3-prompt-toolkit{a} python3-ptyprocess{a} python3-py{a} python3-pygments{a} python3-pyparsing{a} python3-pytest{a} python3-requests{a} python3-roman{a} python3-scipy{a} python3-setuptools{a} python3-six{a} python3-snowballstemmer{a} python3-sphinx{a} python3-sphinx-gallery{a} python3-toml{a} python3-traitlets{a} python3-tz{a} python3-uncertainties{a} python3-urllib3{a} python3-wcwidth{a} python3-zipp{a} sgml-base{a} sphinx-common{a} ttf-bitstream-vera{a} xml-core{a} 
The following packages are RECOMMENDED but will NOT be installed:
  javascript-common libpaper-utils optipng python3-bottleneck python3-bs4 python3-html5lib python3-lxml python3-numexpr python3-odf python3-olefile python3-openpyxl python3-tables python3-tk python3-xlwt 
0 packages upgraded, 90 newly installed, 0 to remove and 37 not upgraded.
Need to get 47.7 MB of archives. After unpacking 213 MB will be used.
Writing extended state information...
Get: 1 http://deb.debian.org/debian sid/main i386 sgml-base all 1.30 [15.1 kB]
Get: 2 http://deb.debian.org/debian sid/main i386 python3-lib2to3 all 3.9.1-2 [77.2 kB]
Get: 3 http://deb.debian.org/debian sid/main i386 python3-distutils all 3.9.1-2 [143 kB]
Get: 4 http://deb.debian.org/debian sid/main i386 dh-python all 4.20201102 [99.3 kB]
Get: 5 http://deb.debian.org/debian sid/main i386 xml-core all 0.18+nmu1 [23.8 kB]
Get: 6 http://deb.debian.org/debian sid/main i386 docutils-common all 0.16+dfsg-3 [129 kB]
Get: 7 http://deb.debian.org/debian sid/main i386 fonts-lyx all 2.3.6-1 [205 kB]
Get: 8 http://deb.debian.org/debian sid/main i386 libblas3 i386 3.9.0-3 [147 kB]
Get: 9 http://deb.debian.org/debian sid/main i386 libbrotli1 i386 1.0.9-2+b2 [286 kB]
Get: 10 http://deb.debian.org/debian sid/main i386 libdeflate0 i386 1.7-1 [48.4 kB]
Get: 11 http://deb.debian.org/debian sid/main i386 libpng16-16 i386 1.6.37-3 [303 kB]
Get: 12 http://deb.debian.org/debian sid/main i386 libfreetype6 i386 2.10.4+dfsg-1 [429 kB]
Get: 13 http://deb.debian.org/debian sid/main i386 libgfortran5 i386 10.2.1-3 [643 kB]
Get: 14 http://deb.debian.org/debian sid/main i386 libimagequant0 i386 2.12.2-1.1 [32.4 kB]
Get: 15 http://deb.debian.org/debian sid/main i386 libjbig0 i386 2.1-3.1+b2 [31.5 kB]
Get: 16 http://deb.debian.org/debian sid/main i386 libjpeg62-turbo i386 1:2.0.5-2 [158 kB]
Get: 17 http://deb.debian.org/debian sid/main i386 libjs-jquery all 3.5.1+dfsg+~3.5.5-5 [315 kB]
Get: 18 http://deb.debian.org/debian sid/main i386 libjs-jquery-ui all 1.12.1+dfsg-7 [232 kB]
Get: 19 http://deb.debian.org/debian sid/main i386 libjs-underscore all 1.9.1~dfsg-1 [99.4 kB]
Get: 20 http://deb.debian.org/debian sid/main i386 libjs-sphinxdoc all 3.4.2-1 [127 kB]
Get: 21 http://deb.debian.org/debian sid/main i386 liblapack3 i386 3.9.0-3 [1960 kB]
Get: 22 http://deb.debian.org/debian sid/main i386 liblbfgsb0 i386 3.0+dfsg.3-9 [28.4 kB]
Get: 23 http://deb.debian.org/debian sid/main i386 liblcms2-2 i386 2.9-4+b1 [156 kB]
Get: 24 http://deb.debian.org/debian sid/main i386 libwebp6 i386 0.6.1-2+b1 [274 kB]
Get: 25 http://deb.debian.org/debian sid/main i386 libtiff5 i386 4.2.0-1 [305 kB]
Get: 26 http://deb.debian.org/debian sid/main i386 libwebpdemux2 i386 0.6.1-2+b1 [88.1 kB]
Get: 27 http://deb.debian.org/debian sid/main i386 libwebpmux3 i386 0.6.1-2+b1 [99.2 kB]
Get: 28 http://deb.debian.org/debian sid/main i386 libxau6 i386 1:1.0.8-1+b2 [20.3 kB]
Get: 29 http://deb.debian.org/debian sid/main i386 libxdmcp6 i386 1:1.1.2-3 [26.7 kB]
Get: 30 http://deb.debian.org/debian sid/main i386 libxcb1 i386 1.14-2.1 [144 kB]
Get: 31 http://deb.debian.org/debian sid/main i386 python-babel-localedata all 2.8.0+dfsg.1-5 [5001 kB]
Get: 32 http://deb.debian.org/debian sid/main i386 ttf-bitstream-vera all 1.10-8.1 [223 kB]
Get: 33 http://deb.debian.org/debian sid/main i386 python-matplotlib-data all 3.3.2-2 [4153 kB]
Get: 34 http://deb.debian.org/debian sid/main i386 python3-alabaster all 0.7.8-1.1 [18.6 kB]
Get: 35 http://deb.debian.org/debian sid/main i386 python3-all i386 3.9.1-1 [1056 B]
Get: 36 http://deb.debian.org/debian sid/main i386 python3-asteval all 0.9.19-2 [17.4 kB]
Get: 37 http://deb.debian.org/debian sid/main i386 python3-attr all 20.3.0-1 [52.9 kB]
Get: 38 http://deb.debian.org/debian sid/main i386 python3-pkg-resources all 51.1.0-1 [203 kB]
Get: 39 http://deb.debian.org/debian sid/main i386 python3-tz all 2020.5-1 [34.8 kB]
Get: 40 http://deb.debian.org/debian sid/main i386 python3-babel all 2.8.0+dfsg.1-5 [100 kB]
Get: 41 http://deb.debian.org/debian sid/main i386 python3-backcall all 0.2.0-1 [10.7 kB]
Get: 42 http://deb.debian.org/debian sid/main i386 python3-certifi all 2020.6.20-1 [151 kB]
Get: 43 http://deb.debian.org/debian sid/main i386 python3-chardet all 4.0.0-1 [99.0 kB]
Get: 44 http://deb.debian.org/debian sid/main i386 python3-six all 1.15.0-2 [16.9 kB]
Get: 45 http://deb.debian.org/debian sid/main i386 python3-cycler all 0.10.0-3 [8084 B]
Get: 46 http://deb.debian.org/debian sid/main i386 python3-dateutil all 2.8.1-5 [81.7 kB]
Get: 47 http://deb.debian.org/debian sid/main i386 python3-decorator all 4.4.2-2 [15.8 kB]
Get: 48 http://deb.debian.org/debian sid/main i386 python3-roman all 2.0.0-5 [9064 B]
Get: 49 http://deb.debian.org/debian sid/main i386 python3-docutils all 0.16+dfsg-3 [384 kB]
Get: 50 http://deb.debian.org/debian sid/main i386 python3-future all 0.18.2-5 [349 kB]
Get: 51 http://deb.debian.org/debian sid/main i386 python3-idna all 2.10-1 [37.4 kB]
Get: 52 http://deb.debian.org/debian sid/main i386 python3-imagesize all 1.2.0-2 [5824 B]
Get: 53 http://deb.debian.org/debian sid/main i386 python3-more-itertools all 4.2.0-3 [42.7 kB]
Get: 54 http://deb.debian.org/debian sid/main i386 python3-zipp all 1.0.0-3 [6060 B]
Get: 55 http://deb.debian.org/debian sid/main i386 python3-importlib-metadata all 1.6.0-2 [10.3 kB]
Get: 56 http://deb.debian.org/debian sid/main i386 python3-iniconfig all 1.1.1-1 [6308 B]
Get: 57 http://deb.debian.org/debian sid/main i386 python3-parso all 0.8.1-1 [65.9 kB]
Get: 58 http://deb.debian.org/debian sid/main i386 python3-jedi all 0.18.0-1 [620 kB]
Get: 59 http://deb.debian.org/debian sid/main i386 python3-ptyprocess all 0.7.0-1 [13.6 kB]
Get: 60 http://deb.debian.org/debian sid/main i386 python3-pexpect all 4.8.0-1 [54.9 kB]
Get: 61 http://deb.debian.org/debian sid/main i386 python3-pickleshare all 0.7.5-3 [7604 B]
Get: 62 http://deb.debian.org/debian sid/main i386 python3-wcwidth all 0.1.9+dfsg1-2 [18.2 kB]
Get: 63 http://deb.debian.org/debian sid/main i386 python3-prompt-toolkit all 3.0.9-1 [254 kB]
Get: 64 http://deb.debian.org/debian sid/main i386 python3-pygments all 2.7.1+dfsg-1 [656 kB]
Get: 65 http://deb.debian.org/debian sid/main i386 python3-ipython-genutils all 0.2.0-4 [21.4 kB]
Get: 66 http://deb.debian.org/debian sid/main i386 python3-traitlets all 5.0.5-1 [84.4 kB]
Get: 67 http://deb.debian.org/debian sid/main i386 python3-ipython all 7.19.0-3 [516 kB]
Get: 68 http://deb.debian.org/debian sid/main i386 python3-markupsafe i386 1.1.1-1+b3 [15.3 kB]
Get: 69 http://deb.debian.org/debian sid/main i386 python3-jinja2 all 2.11.2-1 [113 kB]
Get: 70 http://deb.debian.org/debian sid/main i386 python3-kiwisolver i386 1.3.1-1+b1 [58.5 kB]
Get: 71 http://deb.debian.org/debian sid/main i386 python3-pyparsing all 2.4.7-1 [109 kB]
Get: 72 http://deb.debian.org/debian sid/main i386 python3-numpy i386 1:1.19.4-1+b1 [3599 kB]
Get: 73 http://deb.debian.org/debian sid/main i386 python3-pil i386 8.1.0-1 [442 kB]
Get: 74 http://deb.debian.org/debian sid/main i386 python3-matplotlib i386 3.3.2-2+b1 [4163 kB]
Get: 75 http://deb.debian.org/debian sid/main i386 python3-packaging all 20.8-1 [32.6 kB]
Get: 76 http://deb.debian.org/debian sid/main i386 python3-pandas-lib i386 1.1.5+dfsg-1 [3182 kB]
Get: 77 http://deb.debian.org/debian sid/main i386 python3-pandas all 1.1.5+dfsg-1 [2096 kB]
Get: 78 http://deb.debian.org/debian sid/main i386 python3-pluggy all 0.13.0-5 [22.1 kB]
Get: 79 http://deb.debian.org/debian sid/main i386 python3-py all 1.10.0-1 [94.2 kB]
Get: 80 http://deb.debian.org/debian sid/main i386 python3-toml all 0.10.1-1 [15.9 kB]
Get: 81 http://deb.debian.org/debian sid/main i386 python3-pytest all 6.0.2-2 [211 kB]
Get: 82 http://deb.debian.org/debian sid/main i386 python3-urllib3 all 1.26.2-1 [113 kB]
Get: 83 http://deb.debian.org/debian sid/main i386 python3-requests all 2.25.1+dfsg-2 [69.3 kB]
Get: 84 http://deb.debian.org/debian sid/main i386 python3-scipy i386 1.5.4-1+b1 [10.8 MB]
Get: 85 http://deb.debian.org/debian sid/main i386 python3-setuptools all 51.1.0-1 [1099 kB]
Get: 86 http://deb.debian.org/debian sid/main i386 python3-snowballstemmer all 2.0.0-2 [58.2 kB]
Get: 87 http://deb.debian.org/debian sid/main i386 sphinx-common all 3.4.2-1 [578 kB]
Get: 88 http://deb.debian.org/debian sid/main i386 python3-sphinx all 3.4.2-1 [545 kB]
Get: 89 http://deb.debian.org/debian sid/main i386 python3-sphinx-gallery all 0.8.1-1 [111 kB]
Get: 90 http://deb.debian.org/debian sid/main i386 python3-uncertainties all 3.1.5-1 [78.8 kB]
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update-alternatives: using /usr/lib/i386-linux-gnu/blas/libblas.so.3 to provide /usr/lib/i386-linux-gnu/libblas.so.3 (libblas.so.3-i386-linux-gnu) in auto mode
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Setting up python3-toml (0.10.1-1) ...
Setting up libgfortran5:i386 (10.2.1-3) ...
Setting up python3-urllib3 (1.26.2-1) ...
Setting up python3-traitlets (5.0.5-1) ...
Setting up python3-dateutil (2.8.1-5) ...
Setting up sgml-base (1.30) ...
Setting up libtiff5:i386 (4.2.0-1) ...
Setting up libjs-jquery (3.5.1+dfsg+~3.5.5-5) ...
Setting up python-matplotlib-data (3.3.2-2) ...
Setting up libwebpmux3:i386 (0.6.1-2+b1) ...
Setting up python3-lib2to3 (3.9.1-2) ...
Setting up libjs-underscore (1.9.1~dfsg-1) ...
Setting up python3-imagesize (1.2.0-2) ...
Setting up python3-ptyprocess (0.7.0-1) ...
Setting up python3-prompt-toolkit (3.0.9-1) ...
Setting up python3-distutils (3.9.1-2) ...
Setting up dh-python (4.20201102) ...
Setting up python3-more-itertools (4.2.0-3) ...
Setting up liblapack3:i386 (3.9.0-3) ...
update-alternatives: using /usr/lib/i386-linux-gnu/lapack/liblapack.so.3 to provide /usr/lib/i386-linux-gnu/liblapack.so.3 (liblapack.so.3-i386-linux-gnu) in auto mode
Setting up python3-setuptools (51.1.0-1) ...
Setting up python3-jedi (0.18.0-1) ...
Setting up python3-babel (2.8.0+dfsg.1-5) ...
update-alternatives: using /usr/bin/pybabel-python3 to provide /usr/bin/pybabel (pybabel) in auto mode
Setting up libwebpdemux2:i386 (0.6.1-2+b1) ...
Setting up python3-all (3.9.1-1) ...
Setting up python3-zipp (1.0.0-3) ...
Setting up python3-packaging (20.8-1) ...
Setting up libjs-jquery-ui (1.12.1+dfsg-7) ...
Setting up libfreetype6:i386 (2.10.4+dfsg-1) ...
Setting up python3-pexpect (4.8.0-1) ...
Setting up python3-requests (2.25.1+dfsg-2) ...
Setting up python3-numpy (1:1.19.4-1+b1) ...
Setting up libjs-sphinxdoc (3.4.2-1) ...
Setting up xml-core (0.18+nmu1) ...
Setting up python3-future (0.18.2-5) ...
update-alternatives: using /usr/bin/python3-futurize to provide /usr/bin/futurize (futurize) in auto mode
update-alternatives: using /usr/bin/python3-pasteurize to provide /usr/bin/pasteurize (pasteurize) in auto mode
Setting up liblbfgsb0:i386 (3.0+dfsg.3-9) ...
Setting up python3-uncertainties (3.1.5-1) ...
Setting up python3-scipy (1.5.4-1+b1) ...
Setting up python3-importlib-metadata (1.6.0-2) ...
Setting up python3-pandas-lib:i386 (1.1.5+dfsg-1) ...
Setting up python3-pil:i386 (8.1.0-1) ...
Setting up python3-pandas (1.1.5+dfsg-1) ...
Setting up python3-ipython (7.19.0-3) ...
Setting up sphinx-common (3.4.2-1) ...
Setting up python3-pluggy (0.13.0-5) ...
Setting up python3-matplotlib (3.3.2-2+b1) ...
Setting up python3-pytest (6.0.2-2) ...
Processing triggers for libc-bin (2.31-5) ...
Processing triggers for man-db (2.9.3-2) ...
Processing triggers for sgml-base (1.30) ...
Setting up docutils-common (0.16+dfsg-3) ...
Processing triggers for sgml-base (1.30) ...
Setting up python3-docutils (0.16+dfsg-3) ...
update-alternatives: using /usr/share/docutils/scripts/python3/rst-buildhtml to provide /usr/bin/rst-buildhtml (rst-buildhtml) in auto mode
update-alternatives: using /usr/share/docutils/scripts/python3/rst2html to provide /usr/bin/rst2html (rst2html) in auto mode
update-alternatives: using /usr/share/docutils/scripts/python3/rst2html4 to provide /usr/bin/rst2html4 (rst2html4) in auto mode
update-alternatives: using /usr/share/docutils/scripts/python3/rst2html5 to provide /usr/bin/rst2html5 (rst2html5) in auto mode
update-alternatives: using /usr/share/docutils/scripts/python3/rst2latex to provide /usr/bin/rst2latex (rst2latex) in auto mode
update-alternatives: using /usr/share/docutils/scripts/python3/rst2man to provide /usr/bin/rst2man (rst2man) in auto mode
update-alternatives: using /usr/share/docutils/scripts/python3/rst2odt to provide /usr/bin/rst2odt (rst2odt) in auto mode
update-alternatives: using /usr/share/docutils/scripts/python3/rst2odt_prepstyles to provide /usr/bin/rst2odt_prepstyles (rst2odt_prepstyles) in auto mode
update-alternatives: using /usr/share/docutils/scripts/python3/rst2pseudoxml to provide /usr/bin/rst2pseudoxml (rst2pseudoxml) in auto mode
update-alternatives: using /usr/share/docutils/scripts/python3/rst2s5 to provide /usr/bin/rst2s5 (rst2s5) in auto mode
update-alternatives: using /usr/share/docutils/scripts/python3/rst2xetex to provide /usr/bin/rst2xetex (rst2xetex) in auto mode
update-alternatives: using /usr/share/docutils/scripts/python3/rst2xml to provide /usr/bin/rst2xml (rst2xml) in auto mode
update-alternatives: using /usr/share/docutils/scripts/python3/rstpep2html to provide /usr/bin/rstpep2html (rstpep2html) in auto mode
Setting up python3-sphinx (3.4.2-1) ...
Setting up python3-sphinx-gallery (0.8.1-1) ...
Reading package lists...
Building dependency tree...
Reading state information...
Reading extended state information...
Initializing package states...
Writing extended state information...
Building tag database...
 -> Finished installing the build-deps
Updating symlinks in /usr/lib/ccache ...
Statistics zeroed
dpkg-buildpackage: info: source package lmfit-py
dpkg-buildpackage: info: source version 1.0.1-4+salsaci
dpkg-buildpackage: info: source distribution UNRELEASED
dpkg-buildpackage: info: source changed by Picca Frédéric-Emmanuel <picca@debian.org>
 dpkg-source --before-build .
dpkg-buildpackage: info: host architecture i386
 debian/rules clean
dh clean --with python3,sphinxdoc --buildsystem=pybuild
   dh_auto_clean -O--buildsystem=pybuild
    pybuild --clean --test-pytest -i python{version} -p 3.9
I: pybuild base:232: python3.9 setup.py clean 
running clean
removing '/builds/science-team/lmfit-py/debian/output/source_dir/.pybuild/cpython3_3.9_lmfit/build' (and everything under it)
'build/bdist.linux-i386' does not exist -- can't clean it
'build/scripts-3.9' does not exist -- can't clean it
    rm -rf .pybuild/
    find . -name \*.pyc -exec rm {} \;
   dh_autoreconf_clean -O--buildsystem=pybuild
   dh_clean -O--buildsystem=pybuild
    rm -f debian/debhelper-build-stamp
    rm -rf debian/.debhelper/
    rm -f -- debian/python3-lmfit.substvars debian/python-lmfit-doc.substvars debian/files
    rm -fr -- debian/python3-lmfit/ debian/tmp/ debian/python-lmfit-doc/
    find .  \( \( \
        \( -path .\*/.git -o -path .\*/.svn -o -path .\*/.bzr -o -path .\*/.hg -o -path .\*/CVS -o -path .\*/.pc -o -path .\*/_darcs \) -prune -o -type f -a \
            \( -name '#*#' -o -name '.*~' -o -name '*~' -o -name DEADJOE \
         -o -name '*.orig' -o -name '*.rej' -o -name '*.bak' \
         -o -name '.*.orig' -o -name .*.rej -o -name '.SUMS' \
         -o -name TAGS -o \( -path '*/.deps/*' -a -name '*.P' \) \
        \) -exec rm -f {} + \) -o \
        \( -type d -a -name autom4te.cache -prune -exec rm -rf {} + \) \)
 dpkg-source -b .
dpkg-source: info: using source format '3.0 (quilt)'
dpkg-source: info: building lmfit-py using existing ./lmfit-py_1.0.1.orig.tar.gz
dpkg-source: info: using patch list from debian/patches/series
dpkg-source: warning: ignoring deletion of file examples/README.txt, use --include-removal to override
dpkg-source: warning: ignoring deletion of directory doc/__pycache__
dpkg-source: warning: ignoring deletion of file doc/__pycache__/extensions.cpython-37.pyc, use --include-removal to override
dpkg-source: info: building lmfit-py in lmfit-py_1.0.1-4+salsaci.debian.tar.xz
dpkg-source: info: building lmfit-py in lmfit-py_1.0.1-4+salsaci.dsc
 debian/rules binary
dh binary --with python3,sphinxdoc --buildsystem=pybuild
   dh_update_autotools_config -O--buildsystem=pybuild
   dh_autoreconf -O--buildsystem=pybuild
   dh_auto_configure -O--buildsystem=pybuild
    pybuild --configure --test-pytest -i python{version} -p 3.9
I: pybuild base:232: python3.9 setup.py config 
running config
   dh_auto_build -O--buildsystem=pybuild
    pybuild --build --test-pytest -i python{version} -p 3.9
I: pybuild base:232: /usr/bin/python3 setup.py build 
running build
running build_py
creating /builds/science-team/lmfit-py/debian/output/source_dir/.pybuild/cpython3_3.9_lmfit/build/lmfit
copying lmfit/lineshapes.py -> /builds/science-team/lmfit-py/debian/output/source_dir/.pybuild/cpython3_3.9_lmfit/build/lmfit
copying lmfit/printfuncs.py -> /builds/science-team/lmfit-py/debian/output/source_dir/.pybuild/cpython3_3.9_lmfit/build/lmfit
copying lmfit/__init__.py -> /builds/science-team/lmfit-py/debian/output/source_dir/.pybuild/cpython3_3.9_lmfit/build/lmfit
copying lmfit/parameter.py -> /builds/science-team/lmfit-py/debian/output/source_dir/.pybuild/cpython3_3.9_lmfit/build/lmfit
copying lmfit/confidence.py -> /builds/science-team/lmfit-py/debian/output/source_dir/.pybuild/cpython3_3.9_lmfit/build/lmfit
copying lmfit/jsonutils.py -> /builds/science-team/lmfit-py/debian/output/source_dir/.pybuild/cpython3_3.9_lmfit/build/lmfit
copying lmfit/_ampgo.py -> /builds/science-team/lmfit-py/debian/output/source_dir/.pybuild/cpython3_3.9_lmfit/build/lmfit
copying lmfit/models.py -> /builds/science-team/lmfit-py/debian/output/source_dir/.pybuild/cpython3_3.9_lmfit/build/lmfit
copying lmfit/_version.py -> /builds/science-team/lmfit-py/debian/output/source_dir/.pybuild/cpython3_3.9_lmfit/build/lmfit
copying lmfit/model.py -> /builds/science-team/lmfit-py/debian/output/source_dir/.pybuild/cpython3_3.9_lmfit/build/lmfit
copying lmfit/minimizer.py -> /builds/science-team/lmfit-py/debian/output/source_dir/.pybuild/cpython3_3.9_lmfit/build/lmfit
UPDATING /builds/science-team/lmfit-py/debian/output/source_dir/.pybuild/cpython3_3.9_lmfit/build/lmfit/_version.py
set /builds/science-team/lmfit-py/debian/output/source_dir/.pybuild/cpython3_3.9_lmfit/build/lmfit/_version.py to '1.0.1'
   debian/rules override_dh_auto_test
make[1]: Entering directory '/builds/science-team/lmfit-py/debian/output/source_dir'
dh_auto_test
    pybuild --test --test-pytest -i python{version} -p 3.9
I: pybuild pybuild:284: cp -r NIST_STRD examples /builds/science-team/lmfit-py/debian/output/source_dir/.pybuild/cpython3_3.9_lmfit/build
I: pybuild base:232: cd /builds/science-team/lmfit-py/debian/output/source_dir/.pybuild/cpython3_3.9_lmfit/build; python3.9 -m pytest tests
============================= test session starts ==============================
platform linux -- Python 3.9.1, pytest-6.0.2, py-1.10.0, pluggy-0.13.0
rootdir: /builds/science-team/lmfit-py/debian/output/source_dir
collected 525 items

tests/test_1variable.py .                                                [  0%]
tests/test_NIST_Strd.py ...........................                      [  5%]
tests/test_algebraic_constraint.py ....                                  [  6%]
tests/test_ampgo.py ............                                         [  8%]
tests/test_basicfit.py .                                                 [  8%]
tests/test_basinhopping.py .....                                         [  9%]
tests/test_bounded_jacobian.py .                                         [  9%]
tests/test_bounds.py .                                                   [  9%]
tests/test_brute.py ............                                         [ 12%]
tests/test_builtin_models.py .....                                       [ 13%]
tests/test_confidence.py .............                                   [ 15%]
tests/test_covariance_matrix.py ..ssssssss                               [ 17%]
tests/test_custom_independentvar.py .                                    [ 17%]
tests/test_default_kws.py .                                              [ 17%]
tests/test_dual_annealing.py ...                                         [ 18%]
tests/test_itercb.py .......                                             [ 19%]
tests/test_jsonutils.py ................                                 [ 22%]
tests/test_least_squares.py .....                                        [ 23%]
tests/test_lineshapes.py ............................................... [ 32%]
........................                                                 [ 37%]
tests/test_manypeaks_speed.py .                                          [ 37%]
tests/test_max_nfev.py ...x.................x.x...                       [ 42%]
tests/test_minimizer.py .                                                [ 42%]
tests/test_model.py ...................F................................ [ 52%]
........................s....s.......................................... [ 66%]
                                                                         [ 66%]
tests/test_model_uncertainties.py ....                                   [ 67%]
tests/test_multidatasets.py .                                            [ 67%]
tests/test_nose.py ...............s........                              [ 72%]
tests/test_pandas.py .                                                   [ 72%]
tests/test_parameter.py ................................................ [ 81%]
..........                                                               [ 83%]
tests/test_parameters.py ............................                    [ 88%]
tests/test_printfuncs.py .................................               [ 94%]
tests/test_saveload.py .s.s..............                                [ 98%]
tests/test_shgo.py .......                                               [ 99%]
tests/test_stepmodel.py ..                                               [100%]

=================================== FAILURES ===================================
_________________ TestUserDefiniedModel.test_model_nan_policy __________________

self = <test_model.TestUserDefiniedModel testMethod=test_model_nan_policy>

    def test_model_nan_policy(self):
        """Tests for nan_policy with NaN values in the input data."""
        x = np.linspace(0, 10, 201)
        np.random.seed(0)
        y = gaussian(x, 10.0, 6.15, 0.8)
        y += gaussian(x, 8.0, 6.35, 1.1)
        y += gaussian(x, 0.25, 6.00, 7.5)
        y += np.random.normal(size=len(x), scale=0.5)

        # with NaN values in the input data
        y[55] = y[91] = np.nan
        mod = PseudoVoigtModel()
        params = mod.make_params(amplitude=20, center=5.5,
                                 sigma=1, fraction=0.25)
        params['fraction'].vary = False

        # with raise, should get a ValueError
        result = lambda: mod.fit(y, params, x=x, nan_policy='raise')
        msg = ('NaN values detected in your input data or the output of your '
               'objective/model function - fitting algorithms cannot handle this!')
        self.assertRaisesRegex(ValueError, msg, result)

        # with propagate, should get no error, but bad results
        result = mod.fit(y, params, x=x, nan_policy='propagate')
>       self.assertTrue(result.success)
E       AssertionError: False is not true

tests/test_model.py:647: AssertionError
=============================== warnings summary ===============================
.pybuild/cpython3_3.9_lmfit/build/tests/test_lineshapes.py::test_no_ZeroDivisionError_and_finite_output[logistic]
  /builds/science-team/lmfit-py/debian/output/source_dir/.pybuild/cpython3_3.9_lmfit/build/lmfit/lineshapes.py:184: RuntimeWarning: overflow encountered in exp
    return amplitude*(1. - 1./(1. + exp((x-center)/max(tiny, sigma))))

.pybuild/cpython3_3.9_lmfit/build/tests/test_lineshapes.py::test_no_ZeroDivisionError_and_finite_output[thermal_distribution]
  /builds/science-team/lmfit-py/debian/output/source_dir/.pybuild/cpython3_3.9_lmfit/build/lmfit/lineshapes.py:344: RuntimeWarning: divide by zero encountered in true_divide
    return real(1/(amplitude*exp((x - center)/kt) + offset + tiny*1j))

.pybuild/cpython3_3.9_lmfit/build/tests/test_lineshapes.py::test_x_float_value[step]
.pybuild/cpython3_3.9_lmfit/build/tests/test_lineshapes.py::test_x_float_value[rectangle]
  <__array_function__ internals>:5: DeprecationWarning: Calling nonzero on 0d arrays is deprecated, as it behaves surprisingly. Use `atleast_1d(cond).nonzero()` if the old behavior was intended. If the context of this warning is of the form `arr[nonzero(cond)]`, just use `arr[cond]`.

.pybuild/cpython3_3.9_lmfit/build/tests/test_nose.py::CommonMinimizerTest::test_diffev_bounds_check
  /builds/science-team/lmfit-py/debian/output/source_dir/.pybuild/cpython3_3.9_lmfit/build/lmfit/minimizer.py:933: RuntimeWarning: ignoring `maxiter` argument to `scalar_minimize()`. Use `max_nfev` instead.
    warnings.warn(MAXEVAL_Warning % ('maxiter', thisfuncname()),

-- Docs: https://docs.pytest.org/en/stable/warnings.html
=========================== short test summary info ============================
FAILED tests/test_model.py::TestUserDefiniedModel::test_model_nan_policy - As...
= 1 failed, 508 passed, 13 skipped, 3 xfailed, 5 warnings in 70.69s (0:01:10) ==
E: pybuild pybuild:353: test: plugin distutils failed with: exit code=1: cd /builds/science-team/lmfit-py/debian/output/source_dir/.pybuild/cpython3_3.9_lmfit/build; python3.9 -m pytest tests
dh_auto_test: error: pybuild --test --test-pytest -i python{version} -p 3.9 returned exit code 13
make[1]: *** [debian/rules:19: override_dh_auto_test] Error 25
make[1]: Leaving directory '/builds/science-team/lmfit-py/debian/output/source_dir'
make: *** [debian/rules:10: binary] Error 2
dpkg-buildpackage: error: debian/rules binary subprocess returned exit status 2
section_end:1610009616:step_script
section_start:1610009616:upload_artifacts_on_failure
Uploading artifacts for failed job
Uploading artifacts...
/builds/science-team/lmfit-py/debian/output/: found 390 matching files and directories 
Uploading artifacts as "archive" to coordinator... ok  id=1320559 responseStatus=201 Created token=dq9VVDru
section_end:1610009619:upload_artifacts_on_failure
section_start:1610009619:cleanup_file_variables
Cleaning up file based variables
section_end:1610009619:cleanup_file_variables
ERROR: Job failed: exit code 1


[picca]

Here a summarize of our tests

https://ci.debian.net/packages/l/lmfit-py/

Just tell which architecture are not supported by you and I will deactivated them from our continuous integration.

Cheers

Frederic

[newville]

@picca Lmfit is pure Python. It neither "supports" nor "does not support" different families of processors. So, to your demand of

Just tell which architecture are not supported by you and I will deactivated them from our continuous integration.

The only answer we can give is "No".

Nan handling is complicated and fragile - we try our best to test for these cases. I have not looked in detail at all of the test reports, but I will bet that the vast majority (> 98%) of tests do pass and that the failures come only when trying to handle and interpret Nans. That means that lmfit "works" and Nan handling is complicated and fragile. Having your packaging system rely on 100% test passage may not be the best approach.

On the other hand (wait, no, it is actually the same hand), Lmfit is pure Python and so readily installed without needing dedicated packaging for a particular OS (debian, rpm, MacPorts, brew, etc). It is fine with us if you or some else wants to have packages using other systems. But errors in building or testing these packages are not problems that we are going to be able to address here.

We have a CI testing system that we use. That quite literally means that we do not use other testing systems, and cannot control or consider its results to be interesting or worth addressing. Please stop raising issues from other testing systems here.

[picca]

Thanks for this clear answser. I will do my best to avoid poluting your github with these non supported arch.

cheers

Fred

[newville]

@picca Perhaps I was not clear. We do not have any "non supported arch".