lmoffatt / macro_dr

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Define correct implementation of macro_dr and define the conditions. #62

Open lmoffatt opened 9 months ago

lmoffatt commented 9 months ago

The question is: is our current implementation of macro_dr correct for certain conditions?

That begs the question: how we define correct and which are the conditions.

lmoffatt commented 9 months ago

macro_dr does several independent things.

Among them are:

  1. Simulates a kinetic model.
  2. Builds an allosteric model.
  3. Calculates the likelihood of a kinetic model given data or simulation.
  4. Samples a probability function.
  5. Calculates the evidence using 2-4 in two ways : parallel and cumulative.
lmoffatt commented 9 months ago

Simulate and Likelihood constitute a pair of functions that are defined together. Therefore the gradient likelihood test is a good test for both that should be implemented soon. --> #63

lmoffatt commented 9 months ago

Allosteric models construction should be tested--> #64