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lmrodriguezr / enveomics

Scripts and libraries for Environmental Genomics
http://enve-omics.ce.gatech.edu/enveomics
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Example unus-genome-phylogeny.bash has issues with tagging #38

Open lmrodriguezr opened 5 years ago

lmrodriguezr commented 5 years ago

The FastA.tag.rb is producing tmp files that get removed and is not tagging with genome names. See report by Minjae Kim:

(1) In the line of FastA.tag.rb -i $ORG/01.proteome/$b.faa.tmp -o $ORG/01.proteome/$b.faa.tmp -d is -o $ORG/01.proteome/$b.faa.tmp should be -o $ORG/01.proteome/$b.faa or something else other than .tmp? Because after running this, it removes everything.

(2) Also, is the output files from FastA.tag.rb do not need file specific tags? With the above command, I only have ids with >1 ~ >2 ~